Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01790 and BPHYT_RS01795 are separated by 10 nucleotidesBPHYT_RS01795 and BPHYT_RS01800 are separated by 434 nucleotidesBPHYT_RS01800 and BPHYT_RS01810 are separated by 699 nucleotidesBPHYT_RS01810 and BPHYT_RS01815 are separated by 46 nucleotides BPHYT_RS01790: BPHYT_RS01790 - LuxR family transcriptional regulator, at 407,240 to 407,896 _RS01790 BPHYT_RS01795: BPHYT_RS01795 - histidine kinase, at 407,907 to 408,785 _RS01795 BPHYT_RS01800: BPHYT_RS01800 - ferredoxin--NADP reductase, at 409,220 to 409,990 _RS01800 BPHYT_RS01810: BPHYT_RS01810 - sugar ABC transporter permease, at 410,690 to 411,649 _RS01810 BPHYT_RS01815: BPHYT_RS01815 - sugar ABC transporter permease, at 411,696 to 412,706 _RS01815
Group Condition BPHYT_RS01790 BPHYT_RS01795 BPHYT_RS01800 BPHYT_RS01810 BPHYT_RS01815
motility outer cut, LB soft agar motility assay -4.8 -3.4 N.D. +0.0 +0.0
motility outer cut, LB soft agar motility assay -4.5 -3.5 N.D. +0.0 +0.0
motility inner cut, LB soft agar motility assay -3.1 -3.3 N.D. -0.1 +0.1
motility inner cut, LB soft agar motility assay -2.9 -3.0 N.D. -0.2 +0.3
motility inner cut, LB soft agar motility assay -2.5 -2.7 N.D. -0.1 -0.1
motility outer cut, LB soft agar motility assay -2.3 -1.8 N.D. -0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 -1.5 N.D. +0.4 +0.3
carbon source D-Galactose (C) +1.0 +1.0 N.D. -0.9 -1.0
stress Cobalt chloride 0.25 mM +1.2 +1.2 N.D. -0.2 -0.3
vitamin With vitamins t2 +1.1 +1.4 N.D. -0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +0.7 N.D. -0.4 +0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +1.0 N.D. +0.5 -0.4
stress Thallium(I) acetate 0.01 mg/ml +1.3 +1.4 N.D. +0.2 -0.5
vitamin No vitamins t2 +1.3 +1.4 N.D. +0.2 -0.2
stress Bacitracin 0.125 mg/ml +1.5 +1.6 N.D. +0.1 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.4 +1.2 N.D. +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.1 N.D. +0.1 +0.7
carbon source D-Glucose (C) +1.3 +1.3 N.D. +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +0.7 N.D. +0.4 +1.0
stress Paraquat dichloride 0.032 mg/ml +1.2 +1.3 N.D. +0.3 +0.4
stress Nickel (II) chloride 0.5 mM +1.6 +1.6 N.D. -0.0 -0.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.7 +1.9 N.D. +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +0.6 N.D. +0.7 +1.2
carbon source Malonic (C) +1.9 +1.7 N.D. +0.5 -0.7
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.8 +1.7 N.D. +0.1 -0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +1.8 N.D. +0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +2.2 N.D. -0.0 +0.8
carbon source Malonic (C) +1.5 +1.1 N.D. +0.4 +0.7
stress Paraquat dichloride 0.064 mg/ml +2.4 +2.3 N.D. +0.1 -0.1
stress Bacitracin 0.25 mg/ml +3.3 +3.4 N.D. +0.0 -0.5
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