Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01770	BPHYT_RS01775	BPHYT_RS01780	BPHYT_RS01785	BPHYT_RS01790
motility	outer cut, LB soft agar motility assay	N.D.	-0.3	-0.4	-0.2	-4.8
motility	outer cut, LB soft agar motility assay	N.D.	-0.3	+0.1	-0.1	-4.5
motility	inner cut, LB soft agar motility assay	N.D.	+0.0	-0.2	-0.2	-3.1
motility	inner cut, LB soft agar motility assay	N.D.	-0.0	-0.0	-0.2	-2.5
motility	inner cut, LB soft agar motility assay	N.D.	-0.2	+0.4	+0.0	-2.9
motility	outer cut, LB soft agar motility assay	N.D.	-0.1	+0.1	-0.1	-2.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	+0.0	+0.3	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	-0.8	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.5	-0.4	+0.9
phage	36hr PHYTO10 MOI 10	N.D.	-0.3	-0.7	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.3	-0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	-0.4	-0.2	+1.5
carbon source	D-Glucose (C)	N.D.	-0.2	-0.5	-0.1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	-0.3	-0.2	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.2	-0.4	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-0.3	-0.5	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.3	-0.5	-0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.5	+0.6	+0.0	+1.0
stress	Bacitracin 0.125 mg/ml	N.D.	-0.2	-0.1	-0.1	+1.5
carbon source	Malonic (C)	N.D.	+0.0	-0.4	+0.1	+1.5
stress	Nickel (II) chloride 0.5 mM	N.D.	-0.2	-0.0	-0.1	+1.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+0.4	+0.0	-0.2	+1.3
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	+0.1	-0.2	+1.8
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	-0.1	+0.2	+0.1	+1.7
temperature	LB 37C	N.D.	-0.0	+1.8	-0.0	+0.3
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.1	+0.0	+1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	+0.3	+0.5	-0.1	+1.4
carbon source	Malonic (C)	N.D.	+0.1	+0.1	+0.1	+1.9
stress	Paraquat dichloride 0.064 mg/ml	N.D.	-0.1	+0.1	-0.0	+2.4
stress	Bacitracin 0.25 mg/ml	N.D.	-0.0	-0.3	-0.2	+3.3