Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01765 and BPHYT_RS01770 are separated by 10 nucleotidesBPHYT_RS01770 and BPHYT_RS01775 are separated by 378 nucleotidesBPHYT_RS01775 and BPHYT_RS01780 overlap by 4 nucleotidesBPHYT_RS01780 and BPHYT_RS01785 are separated by 375 nucleotides BPHYT_RS01765: BPHYT_RS01765 - carbon-monoxide dehydrogenase, at 401,180 to 403,561 _RS01765 BPHYT_RS01770: BPHYT_RS01770 - carbon monoxide dehydrogenase, at 403,572 to 404,090 _RS01770 BPHYT_RS01775: BPHYT_RS01775 - hypothetical protein, at 404,469 to 404,813 _RS01775 BPHYT_RS01780: BPHYT_RS01780 - hypothetical protein, at 404,810 to 405,178 _RS01780 BPHYT_RS01785: BPHYT_RS01785 - amino acid permease, at 405,554 to 406,945 _RS01785
Group Condition BPHYT_RS01765 BPHYT_RS01770 BPHYT_RS01775 BPHYT_RS01780 BPHYT_RS01785
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. -0.3 -0.8 -0.3
phage 36hr PHYTO1 MOI 10 -0.2 N.D. -0.3 -1.0 +0.2
phage 36hr PHYTO3 MOI 1 -0.1 N.D. -0.0 -1.2 +0.2
phage P. phyto corn MOI 1 -0.2 N.D. -0.1 -0.9 +0.1
phage 24hr PHYTO10 MOI 10 -0.0 N.D. -0.3 -0.8 +0.2
phage 36hr PHYTO8 MOI 10 -0.2 N.D. +0.1 -0.8 +0.1
phage 24hr PHYTO6 MOI 0.1 -0.1 N.D. -0.3 -0.6 +0.2
nophagecontrol 24hr Phyto Lib Only +0.1 N.D. +0.0 -1.0 +0.1
phage 24hr PHYTO10 MOI 1 -0.0 N.D. -0.1 -0.8 +0.2
phage 36hr PHYTO10 MOI 10 +0.0 N.D. -0.3 -0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.4 -0.4 -0.2
phage PHYTO3 MOI 0.1 +0.1 N.D. -0.2 -0.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. -0.2 -0.5 -0.4
phage 36hr PHYTO4 MOI 1 -0.0 N.D. -0.2 -0.7 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. -0.1 -0.3 -0.5
nophagecontrol 36hr Phyto Lib Only +0.2 N.D. -0.3 -0.7 +0.3
phage 24hr PHYTO3 MOI 1 +0.1 N.D. -0.2 -0.7 +0.2
phage 36hr PHYTO2 MOI 1 +0.1 N.D. -0.3 -0.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. -0.5 -0.3 -0.2
phage 36hr PHYTO8 MOI 0.1 -0.0 N.D. +0.2 -0.8 +0.2
phage 36hr PHYTO6 MOI 0.1 +0.1 N.D. -0.0 -0.7 +0.3
phage 36hr PHYTO11 MOI 0.1 +0.1 N.D. -0.1 -0.6 +0.3
phage 36hr PHYTO MOI 0.1 +0.1 N.D. +0.3 -0.9 +0.2
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.5 N.D. +0.4 +0.0 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.0 N.D. +0.5 -0.7 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 N.D. -0.5 +0.4 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.2 N.D. -0.0 +0.6 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 N.D. -0.5 +0.5 -0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 N.D. -0.5 +0.6 +0.0
temperature LB 37C +0.0 N.D. -0.0 +1.8 -0.0
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BPHYT_RS01765
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BPHYT_RS01770
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BPHYT_RS01785
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