Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01730 and BPHYT_RS01735 are separated by 27 nucleotidesBPHYT_RS01735 and BPHYT_RS01740 are separated by 104 nucleotidesBPHYT_RS01740 and BPHYT_RS01745 overlap by 28 nucleotidesBPHYT_RS01745 and BPHYT_RS01750 overlap by 10 nucleotides BPHYT_RS01730: BPHYT_RS01730 - serine/threonine protein kinase, at 393,311 to 394,339 _RS01730 BPHYT_RS01735: BPHYT_RS01735 - membrane protein, at 394,367 to 396,268 _RS01735 BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395 _RS01740 BPHYT_RS01745: BPHYT_RS01745 - carbon monoxide dehydrogenase subunit G, at 397,368 to 397,964 _RS01745 BPHYT_RS01750: BPHYT_RS01750 - von Willebrand factor A, at 397,955 to 399,241 _RS01750
Group Condition BPHYT_RS01730 BPHYT_RS01735 BPHYT_RS01740 BPHYT_RS01745 BPHYT_RS01750
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -2.7 +0.1 +0.2 -0.2 -0.4
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.1 -1.2 -0.7 -0.6
carbon source 2-Deoxy-D-Ribose (C) -0.1 -0.0 -1.2 -0.9 -0.6
supernatant control Vogels_fungal_media; pH 5.5 -2.6 +0.2 +0.0 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.0 -0.0 -0.3 +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.4 -0.1 -0.1 -0.6 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -0.1 -0.1 -0.5 +0.0
phage 24hr PHYTO4 MOI 10 -2.3 +0.1 +0.0 -0.1 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.6 +0.1 -0.3 +0.3 -0.5
phage 36hr PHYTO MOI 0.1 -2.3 -0.0 -0.2 +0.2 +0.2
carbon source Suberic (C) -1.7 +0.2 -0.3 -0.0 -0.2
carbon source Disodium Glutarate (C) -1.9 +0.1 -0.1 +0.1 -0.0
carbon source Protocatechuic Acid (C) -1.5 -0.1 -0.4 -0.2 +0.5
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.7 -0.1 -0.9 -0.7 -0.5
phage 24hr PHYTO6 MOI 10 -1.6 -0.1 -0.7 +0.6 +0.3
phage 24hr PHYTO11 MOI 0.1 -1.9 +0.1 -0.3 +0.8 +0.2
nophagecontrol 24hr Phyto Lib Only -1.1 +0.0 -0.4 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 +0.1 -0.4 -0.2 +0.4
phage 24hr PHYTO3 MOI 10 -0.7 +0.1 -0.7 +0.2 +0.3
phage 36hr PHYTO4 MOI 1 -1.0 +0.1 -0.4 +0.4 +0.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.2 -0.5 +0.5 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.9 +0.0 +0.3 +0.5 -0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.0 -0.2 -0.6 +0.1 -0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 -0.0 -0.6 -0.5 -0.1
phage 24hr PHYTO2 MOI 0.1 -1.0 +0.1 -0.2 +0.6 +0.3
phage 24hr PHYTO6 MOI 0.1 -1.0 +0.3 +0.3 +0.3 +0.1
phage 36hr PHYTO3 MOI 1 +0.5 +0.1 -0.9 +0.5 -0.1
phage 36hr PHYTO9 MOI 1 -0.6 +0.1 -0.3 +0.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.1 +0.4 +0.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.1 +0.0 +1.1 +0.5
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BPHYT_RS01730
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BPHYT_RS01735
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