Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01695 and BPHYT_RS01700 are separated by 65 nucleotidesBPHYT_RS01700 and BPHYT_RS01705 are separated by 272 nucleotidesBPHYT_RS01705 and BPHYT_RS01710 are separated by 241 nucleotidesBPHYT_RS01710 and BPHYT_RS01715 overlap by 4 nucleotides BPHYT_RS01695: BPHYT_RS01695 - L-glyceraldehyde 3-phosphate reductase, at 383,542 to 384,585 _RS01695 BPHYT_RS01700: BPHYT_RS01700 - membrane protein, at 384,651 to 384,836 _RS01700 BPHYT_RS01705: BPHYT_RS01705 - MFS transporter, at 385,109 to 386,311 _RS01705 BPHYT_RS01710: BPHYT_RS01710 - RND transporter, at 386,553 to 388,082 _RS01710 BPHYT_RS01715: BPHYT_RS01715 - RND transporter, at 388,079 to 389,284 _RS01715
Group Condition BPHYT_RS01695 BPHYT_RS01700 BPHYT_RS01705 BPHYT_RS01710 BPHYT_RS01715
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.3 N.D. +0.2 -0.4 -0.8
phage 24hr PHYTO4 MOI 10 -0.7 N.D. -0.2 -0.1 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 N.D. -0.0 -0.4 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. -0.3 -0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 N.D. -0.0 -0.3 -0.4
phage 36hr PHYTO4 MOI 1 -0.5 N.D. -0.2 +0.0 -0.3
carbon source Tween 20 (C) -0.6 N.D. +0.1 +0.0 -0.3
phage 24hr PHYTO6 MOI 1 -0.4 N.D. +0.1 +0.0 -0.4
phage 24hr PHYTO3 MOI 0.1 -0.7 N.D. -0.1 +0.0 +0.1
phage 36hr PHYTO10 MOI 10 -0.2 N.D. +0.0 +0.2 -0.5
phage 36hr PHYTO1 MOI 10 -0.4 N.D. -0.2 +0.3 -0.3
phage 36hr PHYTO3 MOI 1 -0.6 N.D. -0.1 +0.3 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. -0.2 +0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 N.D. +0.2 +0.0 +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.3 +0.0 -0.4
phage 24hr PHYTO3 MOI 1 -0.5 N.D. -0.2 +0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. +0.2 -0.2 +0.2
carbon source Protocatechuic Acid (C) -0.2 N.D. -0.3 +0.4 -0.1
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.4 N.D. -0.1 +0.3 +0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.3 N.D. -0.1 +0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. -0.0 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.3 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 N.D. +0.3 -0.1 +0.7
carbon source D-Glucosamine Hydrochloride (C) +1.1 N.D. -0.2 -0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 N.D. +0.3 +0.4 -0.2
nitrogen source L-Isoleucine (N) -0.1 N.D. +0.1 +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +0.3 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. +0.2 +0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +0.2 +0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. +0.3 +0.3 +0.4
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