Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01640 and BPHYT_RS01645 are separated by 677 nucleotidesBPHYT_RS01645 and BPHYT_RS01650 are separated by 190 nucleotidesBPHYT_RS01650 and BPHYT_RS01655 are separated by 94 nucleotidesBPHYT_RS01655 and BPHYT_RS01660 are separated by 44 nucleotides BPHYT_RS01640: BPHYT_RS01640 - molecular chaperone DnaK, at 372,494 to 372,913 _RS01640 BPHYT_RS01645: BPHYT_RS01645 - cobalamin biosynthesis protein CobW, at 373,591 to 374,679 _RS01645 BPHYT_RS01650: BPHYT_RS01650 - 23S rRNA methyltransferase, at 374,870 to 376,072 _RS01650 BPHYT_RS01655: BPHYT_RS01655 - tyrosine recombinase XerC, at 376,167 to 377,090 _RS01655 BPHYT_RS01660: BPHYT_RS01660 - hypothetical protein, at 377,135 to 377,857 _RS01660
Group Condition BPHYT_RS01640 BPHYT_RS01645 BPHYT_RS01650 BPHYT_RS01655 BPHYT_RS01660
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -0.3 -0.1 N.D. -4.4
vitamin No vitamins t2 N.D. -0.3 -0.0 N.D. -1.6
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -0.3 +0.1 N.D. -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.2 +0.2 N.D. -2.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.0 -0.0 N.D. -1.9
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.4 -0.1 N.D. -2.1
carbon source Phenylacetic 5 mM (C) N.D. -0.3 -0.2 N.D. -1.3
carbon source Disodium Glutarate (C) N.D. +0.2 +0.1 N.D. -2.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -0.0 N.D. -1.7
carbon source D-Alanine (C) N.D. -0.1 +0.0 N.D. -1.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 +0.1 N.D. -1.4
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 +0.1 N.D. -1.3
carbon source Dodecandioic (C) N.D. +0.0 +0.1 N.D. -1.6
phage 36hr PHYTO11 MOI 1 N.D. -0.1 +0.1 N.D. -1.3
carbon source L-Alanine (C) N.D. +0.1 -0.0 N.D. -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 +0.0 N.D. -1.9
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.2 -0.1 N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 +0.1 N.D. -1.2
carbon source adipate (C) N.D. +0.1 +0.1 N.D. -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 +0.3 N.D. -1.1
nitrogen source D-Alanine (N) N.D. +0.3 -0.2 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 +0.3 N.D. -1.2
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.4 -0.1 N.D. -1.3
carbon source Malonic (C) N.D. +0.7 +0.0 N.D. -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.3 +0.1 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.5 -0.1 N.D. -1.1
nophagecontrol 36hr Phyto Lib only N.D. +0.4 +0.1 N.D. -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.8 -0.1 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.7 +0.2 N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 +0.3 N.D. -0.7
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