Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01595 and BPHYT_RS01600 are separated by 323 nucleotidesBPHYT_RS01600 and BPHYT_RS01605 overlap by 34 nucleotidesBPHYT_RS01605 and BPHYT_RS01610 are separated by 227 nucleotidesBPHYT_RS01610 and BPHYT_RS01615 are separated by 669 nucleotides BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784 _RS01595 BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791 _RS01600 BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561 _RS01605 BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688 _RS01610 BPHYT_RS01615: BPHYT_RS01615 - hypothetical protein, at 366,358 to 367,995 _RS01615
Group Condition BPHYT_RS01595 BPHYT_RS01600 BPHYT_RS01605 BPHYT_RS01610 BPHYT_RS01615
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -6.3 -0.5 +0.1 N.D. +0.1
nitrogen source Carnitine Hydrochloride (N) -6.1 -0.2 +0.2 N.D. +0.2
supernatant control Vogels_fungal_media 0.1X -5.5 -0.1 -0.1 N.D. -0.1
nitrogen source Ammonium chloride (N) -5.7 -0.0 +0.1 N.D. +0.1
carbon source D-Sorbitol (C) -5.4 -0.0 -0.2 N.D. +0.0
carbon source Azelaic (C) -5.1 -0.1 -0.1 N.D. -0.2
carbon source L-Rhamnose (C) -5.2 -0.2 +0.0 N.D. +0.1
carbon source Phenylacetic 5 mM (C) -4.5 -0.6 -0.2 N.D. +0.0
carbon source L-Glutamine (C) -4.9 -0.0 -0.2 N.D. -0.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.2 -0.1 +0.1 N.D. +0.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -5.5 +0.3 +0.2 N.D. -0.1
nitrogen source Uridine (N) -5.4 -0.0 +0.1 N.D. +0.1
nutrient L-Serine -5.0 -0.0 -0.0 N.D. -0.1
carbon source L-Tryptophan (C) -5.0 -0.1 +0.1 N.D. -0.1
carbon source Disodium Glutarate (C) -5.1 +0.2 -0.2 N.D. +0.0
carbon source D-Ribose (C) -5.1 -0.0 +0.1 N.D. +0.0
carbon source L-Fucose (C) -5.3 +0.2 -0.1 N.D. +0.2
carbon source D-Fructose (C) -5.0 -0.1 +0.1 N.D. +0.0
nitrogen source L-Glutamine (N) -5.2 -0.1 +0.1 N.D. +0.2
nitrogen source L-Alanine (N) -5.0 -0.2 +0.2 N.D. +0.1
carbon source D-Galactose (C) -5.0 -0.1 +0.2 N.D. +0.0
nitrogen source L-Proline (N) -4.7 -0.4 +0.0 N.D. +0.2
carbon source L-Phenylalanine (C) -5.0 +0.2 -0.0 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.1 +0.1 -0.1 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.2 +0.2 +0.0 N.D. +0.3
carbon source Putrescine (C) -4.8 +0.2 -0.1 N.D. +0.1
nitrogen source D-Alanine (N) -4.7 -0.2 +0.3 N.D. +0.1
carbon source succinate (C) -4.8 +0.2 +0.1 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.0 +0.3 +0.1 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 +0.1 +0.0 N.D. +0.9
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