Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01590 and BPHYT_RS01595 overlap by 4 nucleotidesBPHYT_RS01595 and BPHYT_RS01600 are separated by 323 nucleotidesBPHYT_RS01600 and BPHYT_RS01605 overlap by 34 nucleotidesBPHYT_RS01605 and BPHYT_RS01610 are separated by 227 nucleotides BPHYT_RS01590: BPHYT_RS01590 - methionine biosynthesis protein MetW, at 361,034 to 361,642 _RS01590 BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784 _RS01595 BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791 _RS01600 BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561 _RS01605 BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688 _RS01610
Group Condition BPHYT_RS01590 BPHYT_RS01595 BPHYT_RS01600 BPHYT_RS01605 BPHYT_RS01610
carbon source Protocatechuic Acid (C) -7.6 -4.4 +0.2 -0.3 N.D.
nitrogen source Carnitine Hydrochloride (N) -5.7 -6.1 -0.2 +0.2 N.D.
nitrogen source L-Glutamine (N) -6.5 -5.2 -0.1 +0.1 N.D.
nitrogen source Ammonium chloride (N) -5.6 -5.7 -0.0 +0.1 N.D.
carbon source Azelaic (C) -5.8 -5.1 -0.1 -0.1 N.D.
carbon source Sebacic (C) -6.7 -3.7 -0.2 -0.4 N.D.
nitrogen source L-Asparagine (N) -6.3 -4.5 -0.2 +0.0 N.D.
nutrient L-Histidine -5.4 -4.9 +0.0 -0.1 N.D.
nitrogen source L-Lysine (N) -5.3 -4.5 -0.1 +0.0 N.D.
vitamin No vitamins t2 -5.8 -4.1 -0.0 +0.2 N.D.
carbon source Xylitol (C) -5.7 -4.2 +0.1 +0.1 N.D.
vitamin With vitamins t2 -5.4 -4.0 -0.4 +0.1 N.D.
nitrogen source NAG (N) -4.8 -4.3 -0.5 +0.0 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.9 -6.3 -0.5 +0.1 N.D.
nitrogen source L-Citrulline (N) -5.3 -4.2 -0.1 +0.0 N.D.
carbon source Tween 20 (C) -5.3 -4.3 +0.0 +0.1 N.D.
carbon source succinate (C) -4.8 -4.2 -0.2 -0.4 N.D.
nitrogen source L-Proline (N) -4.3 -4.7 -0.4 +0.0 N.D.
carbon source Dodecandioic (C) -5.6 -3.7 -0.2 +0.1 N.D.
carbon source D-Xylose (C) -4.9 -4.7 -0.0 +0.2 N.D.
carbon source L-Rhamnose (C) -4.1 -5.2 -0.2 +0.0 N.D.
nutrient Min media with glucose -5.4 -4.2 +0.1 +0.1 N.D.
carbon source D-Glucose (C) -4.8 -4.4 -0.1 -0.0 N.D.
carbon source L-Fucose (C) -4.1 -5.3 +0.2 -0.1 N.D.
carbon source propionate (C) -4.8 -3.8 -0.3 -0.3 N.D.
carbon source Sebacic (C) -4.3 -4.5 -0.2 -0.3 N.D.
vitamin With vitamins t1 -4.8 -4.4 +0.1 +0.1 N.D.
carbon source Phenylacetic 5 mM (C) -3.6 -4.5 -0.6 -0.2 N.D.
nitrogen source Uridine (N) -3.6 -5.4 -0.0 +0.1 N.D.
nitrogen source D-Alanine (N) -3.8 -4.7 -0.2 +0.3 N.D.
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BPHYT_RS01590
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BPHYT_RS01595
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