Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01525 and BPHYT_RS01530 are separated by 10 nucleotidesBPHYT_RS01530 and BPHYT_RS01535 are separated by 142 nucleotidesBPHYT_RS01535 and BPHYT_RS01540 overlap by 4 nucleotidesBPHYT_RS01540 and BPHYT_RS01545 are separated by 153 nucleotides BPHYT_RS01525: BPHYT_RS01525 - cell wall shape-determining protein, at 346,137 to 347,285 _RS01525 BPHYT_RS01530: BPHYT_RS01530 - penicillin-binding protein 2, at 347,296 to 349,611 _RS01530 BPHYT_RS01535: BPHYT_RS01535 - rod shape-determining protein MreD, at 349,754 to 350,266 _RS01535 BPHYT_RS01540: BPHYT_RS01540 - rod shape-determining protein MreC, at 350,263 to 351,372 _RS01540 BPHYT_RS01545: BPHYT_RS01545 - rod shape-determining protein MreB, at 351,526 to 352,569 _RS01545
Group Condition BPHYT_RS01525 BPHYT_RS01530 BPHYT_RS01535 BPHYT_RS01540 BPHYT_RS01545
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -2.5 N.D. N.D. N.D.
phage 36hr PHYTO6 MOI 0.1 N.D. -2.1 N.D. N.D. N.D.
phage 24hr PHYTO4 MOI 10 N.D. -1.6 N.D. N.D. N.D.
phage 36hr PHYTO10 MOI 1 N.D. -1.6 N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay N.D. -1.6 N.D. N.D. N.D.
phage 24hr PHYTO1 MOI 10 N.D. -1.4 N.D. N.D. N.D.
pH LB, pH4 N.D. -1.4 N.D. N.D. N.D.
phage 36hr PHYTO4 MOI 1 N.D. -1.3 N.D. N.D. N.D.
phage 24hr PHYTO1 MOI 1 N.D. -1.3 N.D. N.D. N.D.
phage 24hr PHYTO3 MOI 0.1 N.D. -1.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.3 N.D. N.D. N.D.
carbon source adipate (C) N.D. -1.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. -1.2 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. -1.2 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.2 N.D. N.D. N.D.
phage 36hr PHYTO2 MOI 1 N.D. -1.2 N.D. N.D. N.D.
carbon source Trisodium citrate (C) N.D. -1.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.1 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -1.1 N.D. N.D. N.D.
carbon source succinate (C) N.D. -1.1 N.D. N.D. N.D.
nitrogen source L-Serine (N) N.D. -1.0 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.0 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.0 N.D. N.D. N.D.
phage 36hr PHYTO1 MOI 1 N.D. -1.0 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 N.D. N.D. N.D.
nophagecontrol 36hr Phyto Lib Only N.D. -1.0 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 N.D. N.D. N.D.
phage 24hr PHYTO2 MOI 1 N.D. -1.0 N.D. N.D. N.D.
stress Paraquat dichloride 0.032 mg/ml N.D. +1.4 N.D. N.D. N.D.
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