Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS01510 and BPHYT_RS01515 are separated by 213 nucleotidesBPHYT_RS01515 and BPHYT_RS01520 overlap by 4 nucleotidesBPHYT_RS01520 and BPHYT_RS01525 are separated by 107 nucleotidesBPHYT_RS01525 and BPHYT_RS01530 are separated by 10 nucleotides BPHYT_RS01510: BPHYT_RS01510 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 343,886 to 344,332 _RS01510 BPHYT_RS01515: BPHYT_RS01515 - 2-dehydro-3-deoxyglucarate aldolase, at 344,546 to 345,328 _RS01515 BPHYT_RS01520: BPHYT_RS01520 - hypothetical protein, at 345,325 to 346,029 _RS01520 BPHYT_RS01525: BPHYT_RS01525 - cell wall shape-determining protein, at 346,137 to 347,285 _RS01525 BPHYT_RS01530: BPHYT_RS01530 - penicillin-binding protein 2, at 347,296 to 349,611 _RS01530
Group Condition BPHYT_RS01510 BPHYT_RS01515 BPHYT_RS01520 BPHYT_RS01525 BPHYT_RS01530
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.6 -0.2 -0.1 N.D. -2.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.7 -0.1 -0.1 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.4 +0.1 +0.0 N.D. -1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.4 -0.1 -0.1 N.D. -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.4 -0.0 -0.3 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 +0.0 -0.1 N.D. -1.0
stress Nickel (II) chloride 1 mM -1.5 -0.3 +0.0 N.D. -0.5
phage 24hr PHYTO4 MOI 10 -0.6 +0.0 +0.1 N.D. -1.6
phage 36hr PHYTO6 MOI 0.1 +0.4 -0.2 -0.1 N.D. -2.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 +0.7 -0.1 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 +0.2 -0.1 N.D. -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.2 +0.1 N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 +0.4 -0.0 N.D. -1.0
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.2 -0.1 +0.1 N.D. -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.5 -0.3 -0.1 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 +0.4 -0.0 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.8 +0.2 +0.3 N.D. -1.2
phage 36hr PHYTO10 MOI 1 -0.1 +0.4 -0.2 N.D. -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 +0.4 +0.1 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 +0.4 +0.2 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 +0.4 +0.1 N.D. -0.4
phage 24hr PHYTO3 MOI 0.1 +0.5 -0.1 -0.2 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 +0.5 -0.2 N.D. -0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -1.7 +0.1 -0.0 N.D. +0.6
phage 24hr PHYTO1 MOI 10 +0.0 +0.2 +0.3 N.D. -1.4
phage 24hr PHYTO1 MOI 1 +0.4 +0.1 +0.2 N.D. -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.1 +0.3 N.D. -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.8 +0.1 N.D. -0.7
phage 36hr PHYTO3 MOI 1 +0.7 -0.4 +0.2 N.D. -0.7
nophagecontrol 36hr Phyto Lib Only +0.6 +0.1 +0.2 N.D. -1.0
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