Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01380	BPHYT_RS01385	BPHYT_RS01390	BPHYT_RS01395	BPHYT_RS01400
supernatant control	Vogels_fungal_media 0.1X	-1.0	-0.5	N.D.	-0.3	-0.3
nitrogen source	L-Serine (N)	-0.4	-0.3	N.D.	-0.9	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	-0.1	N.D.	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.7	-0.1	N.D.	-0.4	-0.2
supernatant control	Vogels_fungal_media 0.1X	-0.3	-0.2	N.D.	-0.5	-0.4
carbon source	Malonic (C)	-0.2	-0.5	N.D.	-0.6	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.3	N.D.	-0.3	-0.4
carbon source	Suberic (C)	-0.7	-0.1	N.D.	-0.5	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.7	-0.3	N.D.	+0.1	-0.3
nitrogen source	L-Proline (N)	-0.5	-0.2	N.D.	-0.3	-0.1
nitrogen source	L-Alanine (N)	-0.6	-0.2	N.D.	-0.5	+0.1
carbon source	Sebacic (C)	-0.4	-0.4	N.D.	-0.4	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.6	-0.1	N.D.	+0.1	-0.4
phage	36hr PHYTO11 MOI 1	-0.7	-0.1	N.D.	-0.4	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.7	-0.0	N.D.	+0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.6	-0.3	N.D.	+0.5	-0.3
nitrogen source	L-Citrulline (N)	-0.5	-0.3	N.D.	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.2	N.D.	+0.3	-0.1
carbon source	D-Galacturonic Acid (C)	-0.7	+0.4	N.D.	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.4	N.D.	-0.0	-0.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.4	-0.1	N.D.	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.5	N.D.	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.2	N.D.	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.2	N.D.	-0.3	+0.0
carbon source	L-Fucose (C)	-0.3	-0.1	N.D.	+0.6	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-0.4	N.D.	+0.4	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.4	N.D.	+0.5	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.4	N.D.	+0.6	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.1	N.D.	+0.9	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.2	N.D.	+0.8	+0.1