Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01280	BPHYT_RS01285	BPHYT_RS01290	BPHYT_RS01295	BPHYT_RS01300
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.4	-1.2	-0.2	+0.0	-3.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.2	-1.6	+0.3	-0.7	-0.6
phage	36hr PHYTO2 MOI 1	-2.0	-0.1	+0.1	-0.1	-0.8
phage	36hr PHYTO1 MOI 1	-1.1	-0.2	-0.1	-0.4	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.7	-0.1	-0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.6	-0.6	+0.1	-0.3	-0.1
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.9	+0.0	-0.6	-0.7
phage	24hr PHYTO8 MOI 1	-1.1	-0.1	-0.0	-0.2	-0.9
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.4	-0.1	+0.0	-2.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.4	+0.1	+0.0	-0.7
phage	36hr PHYTO2 MOI 1	-1.6	-0.2	+0.1	+0.3	-0.7
phage	24hr PHYTO3 MOI 10	-1.5	-0.2	+0.1	-0.0	-0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+1.0	-0.2	-0.0	-0.1	-2.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	-0.4	-0.1	-0.7	+0.1
phage	24hr PHYTO1 MOI 10	-1.3	-0.0	+0.2	-0.3	-0.5
phage	36hr PHYTO4 MOI 1	-1.0	+0.1	-0.1	+0.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.1	-0.2	+0.4	-1.0
phage	36hr PHYTO6 MOI 0.1	+0.1	-0.3	+0.0	-0.7	-1.0
phage	24hr PHYTO9 MOI 0.1	-0.3	-0.3	+0.1	-0.8	-0.5
phage	P. phyto corn MOI 0.1	-0.4	-0.5	+0.1	+0.0	-1.1
phage	36hr PHYTO6 MOI 1	-1.8	-0.1	+0.1	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	+0.3	-0.1	+0.0	-0.5
carbon source	Suberic (C)	-1.3	-0.4	+0.1	-0.1	+0.5
phage	36hr PHYTO6 MOI 10	-1.1	-0.5	+0.3	-0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.9	-0.5	-0.2	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.7	-0.4	-0.1	+0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.2	+0.0	+0.9	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.2	-0.2	-0.1	-0.5	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+1.1	+0.3	+0.2	-0.2	-0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.6	+0.2	-0.0	+0.4	+0.8