Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01235	BPHYT_RS01240	BPHYT_RS01245	BPHYT_RS01250	BPHYT_RS01255
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.6	-2.8	-0.8	-0.1	+0.2
phage	36hr PHYTO6 MOI 1	-0.6	-2.7	+0.1	-0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-1.6	-0.4	+0.1	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-2.0	-0.1	+0.1	-0.4
nitrogen source	L-Glutamic (N)	-0.3	-1.5	-0.2	-0.1	-0.7
nophagecontrol	24hr Phyto Lib Only	-0.3	-1.3	-0.3	-0.2	-0.5
phage	PHYTO3 MOI 0.1	-0.9	-0.7	-0.2	+0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-1.1	-0.4	-0.3	-0.2
nitrogen source	L-Lysine (N)	-0.2	-2.2	-0.2	-0.1	+0.2
carbon source	Protocatechuic Acid (C)	-0.6	-0.8	-0.5	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-1.9	+0.0	-0.1	+0.4
vitamin	With vitamins t1	-0.5	-1.5	+0.0	+0.2	-0.2
nitrogen source	L-Isoleucine (N)	+0.4	-0.9	-0.3	-0.0	-1.0
phage	36hr PHYTO4 MOI 1	-0.3	-1.5	+0.3	+0.3	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.6	-0.5	-1.1	-0.3	-0.3
phage	36hr PHYTO8 MOI 10	-1.1	+0.5	+0.1	-0.1	-0.6
phage	P. phyto PHYTO2 MOI 1	+0.0	+0.4	-0.6	+0.3	-1.3
phage	24hr PHYTO6 MOI 10	-0.8	+0.3	+0.5	-0.1	-0.8
phage	24hr PHYTO9 MOI 10	+0.4	-1.3	+0.3	+0.3	-0.6
phage	P. phyto PHYTO2 MOI 1	+0.1	-0.8	-0.7	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.1	-0.2	+0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-1.2	+0.1	+0.4	-0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.7	-0.5	+0.1	+0.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	-1.0	+0.3	+0.1	-0.2
phage	24hr PHYTO9 MOI 0.1	-0.6	+0.9	-0.2	+0.3	-0.4
motility	outer cut, LB soft agar motility assay	+0.9	-0.9	-0.0	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.8	-0.6	+0.5	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	+0.8	-0.6	+0.2	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+3.3	-0.3	-0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	+1.9	+0.4	+0.2	+0.1