Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01230	BPHYT_RS01235	BPHYT_RS01240	BPHYT_RS01245	BPHYT_RS01250
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.2	-0.6	-2.8	-0.8	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-0.8	-1.6	-0.4	+0.1
phage	36hr PHYTO6 MOI 1	+0.1	-0.6	-2.7	+0.1	-0.1
nitrogen source	L-Lysine (N)	-0.2	-0.2	-2.2	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.3	-1.9	+0.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.5	-1.1	-0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.5	-2.0	-0.1	+0.1
vitamin	With vitamins t1	-0.4	-0.5	-1.5	+0.0	+0.2
nitrogen source	L-Glutamic (N)	+0.3	-0.3	-1.5	-0.2	-0.1
phage	36hr PHYTO4 MOI 1	-0.4	-0.3	-1.5	+0.3	+0.3
carbon source	Protocatechuic Acid (C)	+0.4	-0.6	-0.8	-0.5	+0.1
phage	PHYTO3 MOI 0.1	+0.5	-0.9	-0.7	-0.2	+0.2
phage	24hr PHYTO1 MOI 10	+0.5	-0.6	-1.1	+0.2	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.4	+0.6	-0.5	-1.1	-0.3
carbon source	Tween 20 (C)	+0.8	+0.1	-0.8	-0.6	+0.1
phage	24hr PHYTO9 MOI 10	-0.1	+0.4	-1.3	+0.3	+0.3
carbon source	L-Arginine (C)	+0.4	+0.5	-0.9	+0.1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.6	+0.4	-1.1	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.6	+1.1	-0.2	+0.1
phage	P. phyto PHYTO2 MOI 1	+0.7	+0.1	-0.8	-0.7	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-0.7	+0.8	-0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.4	-1.2	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.3	+0.8	-0.6	+0.5
motility	outer cut, LB soft agar motility assay	+0.7	+0.9	-0.9	-0.0	-0.1
phage	24hr PHYTO7 MOI 10	+1.2	+0.5	-0.5	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.9	+0.8	-1.0	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+1.0	+0.8	+0.4	-0.4	-0.5
supernatant control	Vogels_fungal_media 0.1X	+0.8	+0.6	+0.7	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.8	+1.9	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.0	+3.3	-0.3	-0.1