Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00880	BPHYT_RS00885	BPHYT_RS00890	BPHYT_RS00895	BPHYT_RS00900
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.1	-1.8	-0.3	-0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.6	-0.2	-0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-1.1	+0.1	-0.0	-1.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.1	-1.3	-0.1	+0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.6	-0.7	-0.3	-0.5
carbon source	succinate (C)	-0.4	-1.0	+0.0	+0.4	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	-1.6	+0.2	-0.2	+0.4
phage	24hr PHYTO7 MOI 10	+0.0	+0.1	-0.3	+0.6	-1.5
phage	24hr PHYTO6 MOI 0.1	+0.1	-1.5	-0.1	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-1.2	+0.0	+0.6	-0.2
phage	24hr PHYTO3 MOI 1	-0.0	-1.8	+0.0	+0.5	+0.4
phage	24hr PHYTO11 MOI 0.1	+0.2	-1.5	-0.2	+0.9	-0.2
phage	24hr PHYTO4 MOI 10	-0.1	-2.3	+0.1	+0.7	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.6	+0.4	+0.5	-0.8
carbon source	Dodecandioic (C)	+0.2	+0.7	-0.0	+0.4	-1.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.5	-0.9	+0.3	-0.3	+1.2
phage	36hr PHYTO4 MOI 1	+0.1	-1.5	-0.0	+0.8	+0.6
phage	24hr PHYTO3 MOI 10	+0.1	-0.5	-0.3	-0.5	+1.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	-0.7	+0.3	+0.5	-0.4
phage	36hr PHYTO6 MOI 10	+0.2	-1.3	+0.3	+0.9	+0.1
phage	36hr PHYTO MOI 0.1	-0.1	-1.0	+0.1	+0.5	+0.7
phage	24hr PHYTO10 MOI 10	-0.1	-0.9	+0.2	+0.4	+0.9
phage	24hr PHYTO6 MOI 10	+0.0	-0.8	-0.4	+0.5	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	+0.9	+0.3	-0.4	+0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.2	+1.1	-0.4	+0.0	+0.7
carbon source	Tween 20 (C)	+0.0	+1.6	-0.3	+0.1	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+2.3	+0.1	-0.1	-1.0
phage	24hr PHYTO2 MOI 0.1	+0.1	+0.6	-0.3	+0.3	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.3	+0.1	+0.7	+0.8
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+2.9	-0.0	-0.0	+0.5