Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00790	BPHYT_RS00795	BPHYT_RS00800	BPHYT_RS00805	BPHYT_RS00810
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.8	-1.0	-0.1	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.0	+0.6	-0.1	+0.1	-0.3
nitrogen source	Ammonium chloride (N)	-1.3	-0.3	-0.2	+0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.9	-0.4	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.3	+0.3	+0.1	-0.2	-0.3
carbon source	D-Galacturonic Acid (C)	-1.1	-0.3	+0.2	-0.3	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.5	-0.5	+0.0	+0.3	-0.5
phage	36hr PHYTO3 MOI 0.1	-1.0	-0.6	-0.1	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.3	-0.3	-0.4	-0.2
phage	24hr PHYTO7 MOI 10	-0.6	+0.2	+0.3	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	-0.1	+0.1	+0.6	+0.3
carbon source	Protocatechuic Acid (C)	+0.9	+0.3	+0.1	-0.6	-0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.8	-0.7	-0.2	+0.2	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.5	-0.3	+0.5	-0.1
carbon source	Tween 20 (C)	+0.9	-0.3	-0.1	-0.4	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.9	-0.2	+0.2	+0.4	-0.4
motility	outer cut, LB soft agar motility assay	+1.3	-0.2	+0.3	-0.2	-0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+1.0	+0.2	-0.4	+0.0	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+1.1	+0.1	+0.3	+0.3	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+1.2	+0.2	-0.4	+0.2	+0.0
carbon source	Sebacic (C)	+1.0	-0.2	+0.2	+0.1	+0.2
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+1.0	+0.2	+0.1	-0.3	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.2	-0.1	+0.8	-0.5
carbon source	D-Glucose 20 mM (C)	+1.5	-0.2	+0.0	+0.0	+0.1
phage	24hr PHYTO6 MOI 1	+1.0	+0.4	-0.3	-0.1	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.3	-0.3	+0.1	+0.0	+0.3
carbon source	Phenylacetic 5 mM (C)	+1.0	+0.5	+0.3	-0.2	-0.0
vitamin	With vitamins t2	+1.0	-0.1	+0.1	+0.2	+0.4
carbon source	Phenylacetic 5 mM (C)	+1.7	+0.1	-0.2	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.5	+0.2	+0.8	-0.1