Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS00705 and BPHYT_RS00710 overlap by 14 nucleotidesBPHYT_RS00710 and BPHYT_RS00715 are separated by 18 nucleotidesBPHYT_RS00715 and BPHYT_RS00720 are separated by 54 nucleotidesBPHYT_RS00720 and BPHYT_RS00725 overlap by 4 nucleotides BPHYT_RS00705: BPHYT_RS00705 - branched-chain amino acid ABC transporter substrate-binding protein, at 164,854 to 165,588 _RS00705 BPHYT_RS00710: BPHYT_RS00710 - branched-chain amino acid ABC transporter ATPase, at 165,575 to 166,318 _RS00710 BPHYT_RS00715: BPHYT_RS00715 - branched-chain amino acid ABC transporter substrate-binding protein, at 166,337 to 167,515 _RS00715 BPHYT_RS00720: BPHYT_RS00720 - amidase, at 167,570 to 168,997 _RS00720 BPHYT_RS00725: BPHYT_RS00725 - hypothetical protein, at 168,994 to 169,539 _RS00725
Group Condition BPHYT_RS00705 BPHYT_RS00710 BPHYT_RS00715 BPHYT_RS00720 BPHYT_RS00725
phage 24hr PHYTO3 MOI 10 -2.1 -1.1 -0.9 -0.3 -0.7
nitrogen source L-Glutamic (N) -3.2 -0.1 +0.2 -0.2 -0.2
phage 36hr PHYTO2 MOI 1 -2.1 +0.2 -0.2 -0.6 -0.3
phage 36hr PHYTO6 MOI 1 -0.3 -0.8 +0.0 -0.5 -1.4
phage 24hr PHYTO9 MOI 10 -1.6 +0.1 -0.3 -0.9 -0.2
phage 24hr PHYTO6 MOI 10 -0.8 -0.3 -0.6 -0.8 -0.0
phage 36hr PHYTO10 MOI 10 -2.1 +0.2 -0.8 -0.8 +0.9
phage PHYTO3 MOI 0.1 -0.9 -0.8 -0.2 -0.3 -0.4
phage 36hr PHYTO6 MOI 0.1 -1.7 +0.3 -0.3 -0.8 +0.2
phage 36hr PHYTO9 MOI 1 -1.1 -0.2 -0.3 -1.0 +0.5
phage 24hr PHYTO7 MOI 1 -2.8 -0.3 +0.4 -0.1 +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -3.5 -0.3 +0.2 +0.1 +1.4
stress Paraquat dichloride 0.032 mg/ml -2.0 -0.0 -0.4 +0.0 +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.0 -0.6 +0.5 -0.2 -0.5
phage P. phyto PHYTO2 MOI 1 +0.6 -0.3 +0.0 -1.4 -0.3
nophagecontrol 24hr Phyto Lib Only -1.0 -0.3 +0.1 -0.5 +0.6
carbon source Phenylacetic 5 mM (C) -1.1 -0.8 -0.3 +0.5 +0.7
phage 24hr PHYTO4 MOI 0.1 -0.8 -0.1 -0.3 -0.6 +1.0
phage 24hr PHYTO9 MOI 0.1 +0.5 +0.4 -0.3 -0.8 -0.6
nophagecontrol 36hr Phyto Lib Only +1.1 -0.8 -0.3 -0.6 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.8 -0.7 +0.1 +0.3 -0.8
phage P. phyto PHYTO2 MOI 0.1 +0.9 -0.1 -0.3 -1.1 +0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.9 -0.5 -0.1 +0.3 -0.8
carbon source Azelaic (C) -0.5 -0.9 +0.4 +0.5 +0.7
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +1.4 -0.0 +0.2 -0.3 -0.8
phage 24hr PHYTO3 MOI 0.1 +1.3 +0.3 -0.3 -0.6 -0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.3 +0.3 +0.3 +1.4
carbon source Malonic (C) +2.0 -0.1 +0.2 -0.3 +0.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.4 +0.3 +0.4 +1.5
vitamin No vitamins t1 +1.3 +0.3 -0.4 -0.3 +1.0
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BPHYT_RS00705
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BPHYT_RS00710
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BPHYT_RS00725
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