Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS00590 and BPHYT_RS00595 are separated by 198 nucleotidesBPHYT_RS00595 and BPHYT_RS00600 are separated by 164 nucleotidesBPHYT_RS00600 and BPHYT_RS00605 are separated by 121 nucleotidesBPHYT_RS00605 and BPHYT_RS00610 are separated by 1 nucleotides BPHYT_RS00590: BPHYT_RS00590 - hypothetical protein, at 143,012 to 143,545 _RS00590 BPHYT_RS00595: BPHYT_RS00595 - N-acyl homoserine lactone synthase, at 143,744 to 144,283 _RS00595 BPHYT_RS00600: BPHYT_RS00600 - histidine kinase, at 144,448 to 145,002 _RS00600 BPHYT_RS00605: BPHYT_RS00605 - hypothetical protein, at 145,124 to 145,339 _RS00605 BPHYT_RS00610: BPHYT_RS00610 - general secretion pathway protein A, at 145,341 to 146,198 _RS00610
Group Condition BPHYT_RS00590 BPHYT_RS00595 BPHYT_RS00600 BPHYT_RS00605 BPHYT_RS00610
phage 24hr PHYTO4 MOI 10 -0.6 -0.8 +0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.1 -0.3 N.D. N.D.
stress A22 0.005 mg/ml -0.6 -0.4 -0.2 N.D. N.D.
motility outer cut, LB soft agar motility assay -0.5 -0.4 -0.3 N.D. N.D.
vitamin With vitamins t2 -0.1 -0.3 -0.8 N.D. N.D.
phage 24hr PHYTO10 MOI 10 -0.3 -0.7 +0.1 N.D. N.D.
phage PHYTO3 MOI 0.1 -0.5 -0.5 +0.1 N.D. N.D.
phage 36hr PHYTO2 MOI 1 -0.5 -0.6 +0.3 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -0.6 -0.3 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -0.4 -0.5 +0.2 N.D. N.D.
phage 24hr PHYTO3 MOI 10 -0.7 +0.2 -0.2 N.D. N.D.
carbon source Sebacic (C) -0.5 +0.4 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.4 +0.3 N.D. N.D.
phage 24hr PHYTO2 MOI 1 -0.2 -0.7 +0.3 N.D. N.D.
carbon source Suberic (C) -0.2 +0.7 -0.7 N.D. N.D.
phage 36hr PHYTO7 MOI 1 -0.4 -0.3 +0.7 N.D. N.D.
phage 36hr PHYTO6 MOI 10 -0.4 -0.1 +0.7 N.D. N.D.
carbon source Tween 20 (C) +0.1 -0.5 +0.7 N.D. N.D.
phage 36hr PHYTO2 MOI 1 +0.3 -0.4 +0.4 N.D. N.D.
carbon source Phenylacetic 5 mM (C) +0.3 -0.4 +0.5 N.D. N.D.
phage 24hr PHYTO2 MOI 0.1 -0.5 +0.5 +0.3 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.5 +0.5 +0.5 N.D. N.D.
nitrogen source L-Phenylalanine (N) -0.3 +0.4 +0.4 N.D. N.D.
phage 36hr PHYTO11 MOI 1 -0.3 +0.3 +0.5 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.2 +0.8 +0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.4 +0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.8 +0.4 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 +0.6 +0.5 N.D. N.D.
nitrogen source L-Isoleucine (N) -0.0 +0.3 +1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +0.6 +0.3 N.D. N.D.
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