Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00530	BPHYT_RS00535	BPHYT_RS00540	BPHYT_RS00545	BPHYT_RS00550
phage	36hr PHYTO11 MOI 1	-0.5	-0.1	-1.5	+0.1	+0.1
phage	24hr PHYTO1 MOI 10	-0.4	-0.1	-0.8	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.0	+0.0	-0.8	-0.1	+0.2
phage	24hr PHYTO3 MOI 0.1	-0.4	-0.3	-0.9	-0.2	+0.1
carbon source	Sebacic (C)	-0.1	-0.5	-0.5	-0.7	+0.2
phage	36hr PHYTO6 MOI 10	-0.4	-0.3	-1.0	+0.3	+0.2
phage	36hr PHYTO4 MOI 1	-0.4	-0.1	-1.4	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	-0.0	-1.4	+0.4	-1.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.6	-0.0	-1.1	-0.1	-0.4
carbon source	Malonic (C)	-0.9	-0.1	+0.8	-0.4	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-1.2	+0.1	+0.2	-0.2	+0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.5	-0.4	-0.9	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	-0.3	-0.7	+0.1	-0.6
vitamin	No vitamins t2	-0.3	+0.4	-0.7	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.1	-0.4	-0.3	+0.2	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	-0.3	-1.1	+0.0	-0.2
nitrogen source	Uridine (N)	+0.6	-0.2	+0.2	-0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.2	-0.2	-0.9	+0.2	-0.6
nitrogen source	L-Alanine (N)	+0.9	+0.1	-0.7	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.3	+0.4	+0.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	-0.1	-0.4	-0.1	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.8	-0.2	-0.7	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	-0.2	-0.3	+0.4	-0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.7	+0.1	-0.5	+0.4	-0.3
phage	24hr PHYTO7 MOI 1	+0.4	-0.3	+0.7	+0.3	-0.5
phage	P. phyto corn MOI 1	+0.4	-0.3	+0.8	-0.5	+0.1
motility	inner cut, LB soft agar motility assay	+1.0	+0.1	-0.5	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.5	+0.4	+0.6	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	-0.2	+0.6	-0.4	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.2	-0.2	+1.3	+0.4	+0.0