Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS00475 and BPHYT_RS00480 are separated by 523 nucleotidesBPHYT_RS00480 and BPHYT_RS00485 are separated by 57 nucleotidesBPHYT_RS00485 and BPHYT_RS00490 are separated by 48 nucleotidesBPHYT_RS00490 and BPHYT_RS00495 are separated by 18 nucleotides BPHYT_RS00475: BPHYT_RS00475 - hypothetical protein, at 114,240 to 114,818 _RS00475 BPHYT_RS00480: BPHYT_RS00480 - excinuclease ABC subunit A, at 115,342 to 117,990 _RS00480 BPHYT_RS00485: BPHYT_RS00485 - ATPase, AAA family, at 118,048 to 119,361 _RS00485 BPHYT_RS00490: BPHYT_RS00490 - NADH dehydrogenase, at 119,410 to 120,729 _RS00490 BPHYT_RS00495: BPHYT_RS00495 - S-formylglutathione hydrolase, at 120,748 to 121,578 _RS00495
Group Condition BPHYT_RS00475 BPHYT_RS00480 BPHYT_RS00485 BPHYT_RS00490 BPHYT_RS00495
carbon source Phenylacetic 5 mM (C) N.D. -0.5 -0.3 -0.4 -0.2
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. -0.3 -0.2 -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 -0.4 -0.2 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -0.3 -0.3 -0.1 -0.2
supernatant control Vogels_fungal_media 0.1X N.D. -0.4 -0.7 +0.1 +0.1
phage 36hr PHYTO7 MOI 1 N.D. -0.2 -0.3 +0.1 -0.5
nophagecontrol 24hr Phyto Lib Only N.D. +0.1 -0.1 +0.1 -0.7
phage 36hr PHYTO10 MOI 10 N.D. -0.3 +0.2 -0.1 -0.4
phage 36hr PHYTO6 MOI 10 N.D. -0.1 +0.2 -0.1 -0.5
phage 24hr PHYTO9 MOI 0.1 N.D. -0.4 +0.3 -0.0 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 -0.6 +0.3 -0.1
phage 24hr PHYTO2 MOI 0.1 N.D. -0.3 -0.1 +0.2 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.3 -0.2 +0.2 -0.2
phage PHYTO3 MOI 0.1 N.D. -0.2 -0.1 +0.2 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. -0.4 -0.2 +0.1 +0.2
phage 36hr PHYTO10 MOI 10 N.D. -0.0 +0.2 +0.2 -0.5
phage 24hr PHYTO3 MOI 0.1 N.D. -0.1 +0.3 +0.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 +0.1 +0.4 -0.5
phage 24hr PHYTO2 MOI 1 N.D. -0.2 +0.2 +0.1 -0.3
phage 36hr PHYTO6 MOI 0.1 N.D. -0.3 +0.3 +0.2 -0.3
phage P. phyto PHYTO2 MOI 1 N.D. -0.1 +0.1 +0.3 -0.4
motility outer cut, LB soft agar motility assay N.D. +0.1 +0.2 +0.1 -0.4
phage 36hr PHYTO8 MOI 10 N.D. +0.2 +0.4 +0.1 -0.4
temperature LB, 37C N.D. +0.5 +0.2 -0.0 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.2 +0.3 +0.3 -0.2
nitrogen source Ammonium chloride (N) N.D. -0.0 +0.3 -0.1 +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.4 -0.1 +0.2 +0.4
r2a control R2A control N.D. +0.2 +0.4 +0.3 +0.1
r2a control R2A control N.D. +0.1 +0.4 +0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +0.4 +0.2 +0.2
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BPHYT_RS00475
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BPHYT_RS00480
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BPHYT_RS00490
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BPHYT_RS00495
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