Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00400	BPHYT_RS00405	BPHYT_RS00410	BPHYT_RS00415	BPHYT_RS00420
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.5	-0.2	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.5	-0.3	-0.6	-0.0
nitrogen source	Uridine (N)	-0.7	-0.1	-0.1	-0.3	-0.8
carbon source	Phenylacetic 5 mM (C)	-0.9	+0.1	-0.5	-0.2	-0.5
nophagecontrol	24hr Phyto Lib Only	-0.8	-0.0	-0.1	-0.2	-0.5
vitamin	With vitamins t1	-0.3	-0.1	-0.1	-0.2	-0.9
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	+0.0	-0.6	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.4	-0.1	-0.3	-0.1
phage	36hr PHYTO11 MOI 1	-0.7	-0.1	+0.1	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+0.1	-0.1	-0.6	-0.1
nitrogen source	L-Lysine (N)	-0.1	-0.5	-0.6	+0.2	-0.2
phage	36hr PHYTO7 MOI 1	-0.8	+0.2	+0.1	+0.1	-0.6
carbon source	succinate (C)	+0.3	-0.0	-0.3	-0.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9	+0.0	-0.0	-0.2	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	+0.1	+0.4	-0.0	-0.7
nophagecontrol	36hr Phyto Lib only	-0.5	-0.1	-0.3	-0.0	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.1	-0.2	-0.4	-0.2
phage	24hr PHYTO11 MOI 0.1	+0.4	+0.1	-0.2	-0.1	-0.5
phage	36hr PHYTO MOI 0.1	-0.6	+0.2	+0.2	-0.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.2	+0.3	-0.4	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.5	+0.2	+0.0	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	+0.0	+0.1	-0.4	+1.5
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	-0.0	+0.3	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.0	+0.0	+0.3	+0.9
motility	outer cut, LB soft agar motility assay	+1.2	+0.1	-0.2	-0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.0	+0.5	-0.2	+1.0
carbon source	adipate (C)	+1.1	+0.0	+0.2	+0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.1	-0.1	+0.1	+0.5
carbon source	Protocatechuic Acid (C)	+0.9	+0.1	+0.2	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.2	+0.1	+0.9	+0.5