Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00365	BPHYT_RS00370	BPHYT_RS00375	BPHYT_RS00380	BPHYT_RS00385
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.3	-0.8	-1.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.8	-0.2	-1.7	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.0	-0.6	-0.8	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.9	-0.8	-0.6	+0.1
carbon source	D-Glucose (C)	-0.3	-0.1	-0.1	-1.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.5	-0.6	-0.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-0.0	-1.3	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.9	-0.4	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.7	-0.3	-1.3	-0.0
carbon source	Tween 20 (C)	+0.1	+0.2	-0.6	-1.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.6	-0.7	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.5	-0.8	+0.8	-0.5
motility	inner cut, LB soft agar motility assay	-0.6	-1.1	+0.1	+0.7	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	-1.0	-0.4	+0.1	-0.0
phage	36hr PHYTO4 MOI 1	-1.2	+0.4	+0.4	-0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.0	+0.5	-1.3	-0.1
phage	36hr PHYTO10 MOI 1	-0.5	+0.8	+0.2	-0.8	-0.2
phage	36hr PHYTO10 MOI 10	-1.1	+0.4	+0.5	+0.1	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.7	+0.5	+0.4	-0.3	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	-0.5	-0.1	+0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.6	+0.3	-0.6	+0.1
nitrogen source	L-Serine (N)	-0.1	+0.7	+0.3	-1.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.5	+0.6	-0.5	-0.1
nitrogen source	L-Proline (N)	-0.4	+0.7	+0.5	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	+1.4	-0.5	+0.2	+0.1
phage	36hr PHYTO8 MOI 10	-0.6	+0.8	+0.4	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.8	+0.1	+1.1	+0.0
temperature	LB 37C	-0.1	+0.3	-0.2	+2.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+1.0	+0.4	+0.6	-0.2
temperature	LB 37C	+0.3	-0.0	+0.3	+2.9	-0.1