Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00260	BPHYT_RS00265	BPHYT_RS00270	BPHYT_RS00275	BPHYT_RS00280
vitamin	With vitamins t2	-0.5	+0.1	-1.6	-0.1	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-0.0	-0.8	-0.6	-0.0
phage	24hr PHYTO9 MOI 10	-0.4	+0.2	-1.1	-0.0	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	+0.2	-0.9	-0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.6	+0.5	-0.6	-0.1	-0.3
motility	outer cut, LB soft agar motility assay	-0.4	-0.2	-0.5	-0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.1	-0.6	-0.2	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.2	-0.5	-0.4	-0.2
supernatant control	Vogels_fungal_media 0.1X	-0.3	+0.5	-0.5	-0.5	-0.0
motility	inner cut, LB soft agar motility assay	-0.5	-0.2	-0.4	+0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	+0.3	-0.6	+0.1	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	+0.5	+0.3	-0.6	-0.1
phage	24hr PHYTO8 MOI 1	+0.0	+0.3	-0.9	-0.1	+0.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.0	-0.7	-0.3	+0.1	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.0	+0.6	-0.4	-0.3	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.1	+0.8	-0.4	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.5	+0.4	-0.3	+0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.3	-0.7	+0.1	+0.6
nitrogen source	L-Serine (N)	+0.3	+0.3	+0.4	-0.1	-0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.4	-0.1	+0.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.2	+0.3	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+0.1	+0.8	+0.2	+0.8
phage	24hr PHYTO3 MOI 10	+0.2	+0.5	+0.5	-0.1	+0.3
nitrogen source	L-Isoleucine (N)	-0.0	+0.3	+0.7	+0.3	+0.3
nitrogen source	L-Citrulline (N)	+0.1	+0.3	+1.1	+0.1	-0.1
phage	36hr PHYTO8 MOI 10	+0.2	+0.4	+0.6	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.0	+1.9	-0.1	-0.0
nitrogen source	Uridine (N)	+0.2	+0.2	+0.8	+0.1	+0.6
phage	24hr PHYTO6 MOI 10	+0.3	-0.0	+0.8	+0.6	+0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.4	+0.1	+0.5	+0.2	+0.8