Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00205	BPHYT_RS00210	BPHYT_RS00215	BPHYT_RS00220	BPHYT_RS00225
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.8	-0.0	-0.0	-0.8	-2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.5	-0.6	-0.5	-1.2
carbon source	Protocatechuic Acid (C)	-1.3	-0.0	-0.0	-1.1	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.2	-0.5	-0.1	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.0	-0.6	-0.4	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	+0.2	-0.6	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.4	-0.3	-0.6	-0.8
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.8	-0.3	+0.1	-0.5	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.1	-0.2	+0.4	-1.6
supernatant control	Vogels_fungal_media 0.1X	-1.2	-0.2	-0.4	-0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.2	+0.2	-0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.2	-0.4	+0.0	-1.1
phage	36hr PHYTO6 MOI 1	-1.2	-0.3	+0.3	-0.1	-0.5
carbon source	L-Proline (C)	-1.0	-0.1	+0.3	-0.4	-0.6
carbon source	L-Fucose (C)	-0.7	-0.6	+0.3	+0.3	-0.9
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.9	-0.4	+0.8	-0.7	-0.3
nitrogen source	L-Glutamic (N)	+0.4	-0.4	-0.4	-0.2	-0.9
carbon source	L-Arginine (C)	+0.2	-0.4	+0.2	-0.6	-0.8
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.4	-0.8	-0.4	+0.5
nophagecontrol	36hr Phyto Lib Only	-0.8	-0.1	+0.5	-0.3	+0.5
phage	36hr PHYTO8 MOI 0.1	-0.9	-0.1	+0.7	-0.3	+0.6
phage	24hr PHYTO10 MOI 10	-0.4	-0.3	+0.2	-0.3	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	-0.4	+0.6	+0.0	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	+0.1	-0.7	+0.0	+1.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.3	+0.5	+0.5	+0.2	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.5	+0.6	+1.0	+0.2
carbon source	Phenylacetic 5 mM (C)	+0.3	+0.4	-0.7	-0.1	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.4	+0.7	-0.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.2	-0.1	+0.1	+0.2	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.5	+0.1	-0.1	+0.5	+0.4