Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS00150 and BPHYT_RS00155 are separated by 302 nucleotidesBPHYT_RS00155 and BPHYT_RS00160 are separated by 124 nucleotidesBPHYT_RS00160 and BPHYT_RS00165 are separated by 131 nucleotidesBPHYT_RS00165 and BPHYT_RS00170 are separated by 22 nucleotides BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679 _RS00150 BPHYT_RS00155: BPHYT_RS00155 - aminotransferase, at 41,982 to 43,136 _RS00155 BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049 _RS00160 BPHYT_RS00165: BPHYT_RS00165 - AraC family transcriptional regulator, at 44,181 to 45,026 _RS00165 BPHYT_RS00170: BPHYT_RS00170 - lysine transporter LysE, at 45,049 to 45,636 _RS00170
Group Condition BPHYT_RS00150 BPHYT_RS00155 BPHYT_RS00160 BPHYT_RS00165 BPHYT_RS00170
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.1 -0.4 -0.5 -0.4 -0.3
phage 24hr PHYTO2 MOI 1 +0.4 -0.5 -1.6 -0.2 -0.2
r2a control R2A control -0.7 -0.5 -0.4 +0.2 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -0.7 -1.1 +0.4 -0.1
phage 36hr PHYTO6 MOI 10 +0.4 +0.2 -1.7 -0.3 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.8 -1.0 -1.0 +0.2 +0.0
carbon source Suberic (C) +0.6 -0.2 -0.9 +0.1 -0.4
carbon source Suberic (C) +0.4 -0.2 -1.3 +0.1 +0.2
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.2 +0.0 -0.9 +0.8 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -1.2 +0.2 +0.7 -0.3 -0.1
carbon source D-Glucose (C) +0.6 +0.2 -1.5 +0.1 +0.0
phage 24hr PHYTO8 MOI 1 +0.7 +0.5 -1.5 -0.1 -0.0
carbon source D-Galacturonic Acid (C) +0.3 -0.0 -1.3 +0.3 +0.5
phage 36hr PHYTO11 MOI 1 +0.8 +0.3 -0.9 -0.5 +0.1
phage 24hr PHYTO3 MOI 0.1 +0.9 -0.3 -1.0 -0.0 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) +1.5 +0.2 -1.8 +0.2 -0.3
phage 24hr PHYTO11 MOI 1 +0.5 +0.3 -0.9 -0.2 +0.3
phage 36hr PHYTO4 MOI 1 +0.9 +0.4 -0.7 -0.4 +0.2
phage 24hr PHYTO11 MOI 0.1 +0.9 +0.2 -1.3 +0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.4 -0.3 +0.4 +1.0
phage 24hr PHYTO7 MOI 1 +1.1 +0.2 -0.9 -0.0 +0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.8 +0.2 +0.7 +0.3 -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.6 +0.5 -0.7 +0.3 +0.2
phage 24hr PHYTO1 MOI 10 +1.0 +0.0 -0.4 -0.3 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +0.1 -1.3 +0.8 +0.3
carbon source Phenylacetic 5 mM (C) +0.8 -0.3 +0.7 +0.5 -0.2
nitrogen source L-Glutamic (N) -0.5 +0.4 +0.7 +0.2 +1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.2 +1.7 +0.6 -0.3
phage 36hr PHYTO11 MOI 1 +1.2 +0.2 +0.6 -0.2 +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.7 +0.5 +0.7 +0.7 -0.0
remove
BPHYT_RS00150
plot		 remove
BPHYT_RS00155
plot		 remove
BPHYT_RS00160		 remove
BPHYT_RS00165
plot		 remove
BPHYT_RS00170
plot