Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS00130 and BPHYT_RS00135 are separated by 93 nucleotidesBPHYT_RS00135 and BPHYT_RS00140 are separated by 49 nucleotidesBPHYT_RS00140 and BPHYT_RS00145 are separated by 114 nucleotidesBPHYT_RS00145 and BPHYT_RS00150 are separated by 43 nucleotides BPHYT_RS00130: BPHYT_RS00130 - ATPase P, at 37,034 to 39,139 _RS00130 BPHYT_RS00135: BPHYT_RS00135 - hypothetical protein, at 39,233 to 39,436 _RS00135 BPHYT_RS00140: BPHYT_RS00140 - MerR family transcriptional regulator, at 39,486 to 39,917 _RS00140 BPHYT_RS00145: BPHYT_RS00145 - hypothetical protein, at 40,032 to 40,232 _RS00145 BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679 _RS00150
Group Condition BPHYT_RS00130 BPHYT_RS00135 BPHYT_RS00140 BPHYT_RS00145 BPHYT_RS00150
stress Zinc 0.5 mM -6.3 N.D. -4.1 +0.0 +0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.2 N.D. -0.7 -0.5 -0.6
r2a control R2A control -0.3 N.D. -0.5 -0.5 -0.7
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.3 N.D. -0.2 -0.3 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -0.4 -0.8 -0.5
phage 24hr PHYTO4 MOI 10 +0.0 N.D. -0.3 -1.6 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 N.D. +0.5 -0.8 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. +0.2 -1.0 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 N.D. -0.2 -0.8 +0.7
phage 24hr PHYTO8 MOI 1 -0.2 N.D. -0.4 -0.7 +0.7
nutrient casaminos -0.1 N.D. +0.4 +0.4 -1.1
lb_dap plate control LB_DAP agar plate, outgrowth in LB -0.2 N.D. -0.2 +0.8 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. +0.7 +0.2 -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 N.D. +0.0 +0.7 -1.1
phage 24hr PHYTO MOI 0.1 -0.2 N.D. +0.2 -0.8 +0.7
phage 36hr PHYTO11 MOI 1 -0.3 N.D. -0.2 -0.6 +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 N.D. +0.4 +0.8 -0.5
carbon source Protocatechuic Acid (C) -0.4 N.D. +0.2 -0.8 +1.1
phage 36hr PHYTO2 MOI 1 -0.0 N.D. -0.3 -0.5 +1.1
nitrogen source L-Lysine (N) -0.5 N.D. -0.4 +0.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. -0.4 -0.4 +1.7
nitrogen source L-Serine (N) -0.3 N.D. -0.2 +0.2 +1.3
stress Cobalt chloride 0.25 mM +0.8 N.D. +0.8 -0.5 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. +0.2 -0.4 +1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. +0.5 -0.7 +1.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 N.D. -0.5 +0.2 +1.5
phage 36hr PHYTO8 MOI 0.1 -0.3 N.D. +0.4 +0.2 +1.1
phage P. phyto PHYTO2 MOI 0.1 -0.4 N.D. +0.4 +0.3 +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. -0.0 +1.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 N.D. +0.9 +0.2 +0.2
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