Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00120	BPHYT_RS00125	BPHYT_RS00130	BPHYT_RS00135	BPHYT_RS00140
stress	Zinc 0.5 mM	-0.1	+0.1	-6.3	N.D.	-4.1
r2a control	R2A control	-0.0	-0.5	-0.3	N.D.	-0.8
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-1.0	-0.3	+0.2	N.D.	-0.5
r2a control	R2A control	-0.3	-0.4	-0.3	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.2	-0.3	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	+0.1	-0.2	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.3	-0.5	N.D.	-0.2
nitrogen source	L-Phenylalanine (N)	-0.5	-0.2	-0.0	N.D.	-0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.2	-0.3	-0.6	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-0.5	-0.4	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.5	-0.1	N.D.	-0.1
phage	36hr PHYTO7 MOI 0.1	-0.3	-0.2	-0.2	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.7	-0.2	-0.2	N.D.	+0.0
motility	outer cut, LB soft agar motility assay	+0.2	-0.2	-0.3	N.D.	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.5	+0.1	N.D.	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.0	+0.2	-0.1	N.D.	+0.1
motility	outer cut, LB soft agar motility assay	+0.0	+0.2	-0.2	N.D.	-0.8
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.3	+0.3	N.D.	-0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.8	+0.2	+0.2	N.D.	+0.2
phage	36hr PHYTO8 MOI 0.1	+0.0	-0.5	-0.3	N.D.	+0.4
phage	P. phyto PHYTO2 MOI 0.1	-0.3	-0.1	-0.4	N.D.	+0.4
motility	inner cut, LB soft agar motility assay	+0.2	+0.3	-0.2	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.4	-0.3	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	+0.1	-0.6	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.0	+0.4	N.D.	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.4	+0.5	N.D.	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	+0.3	+0.3	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.3	+0.6	N.D.	+0.9
stress	Nickel (II) chloride 1 mM	+0.2	+0.1	+0.5	N.D.	+0.7
stress	Cobalt chloride 0.25 mM	-0.1	+0.3	+0.8	N.D.	+0.8