Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00095	BPHYT_RS00100	BPHYT_RS00105	BPHYT_RS00110	BPHYT_RS00115
nitrogen source	L-Lysine (N)	+0.1	-0.2	-0.5	-0.1	-2.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	-0.1	-0.1	+0.0	-2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.0	-0.0	-0.9	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.1	+0.4	-0.6	-2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	+0.4	-0.2	-0.3	-1.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-0.1	-0.0	-0.6	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.0	-0.3	+0.0	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.3	+0.2	-0.6	-1.4
carbon source	D-Glucose (C)	-0.1	+0.2	-0.2	-0.3	-1.4
carbon source	Phenylacetic 5 mM (C)	-0.1	-0.5	+0.0	+0.2	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.1	-0.2	-1.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.0	+0.3	+0.1	-1.5
phage	24hr PHYTO1 MOI 10	-0.0	+0.3	+0.1	-0.5	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	+0.3	+0.1	-1.8
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.1	+0.6	-0.9	-0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	-0.3	-0.1	+0.8	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.1	-0.2	+0.5	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.5	-0.2	-0.4	-0.6
phage	24hr PHYTO6 MOI 10	-0.5	+0.2	+0.3	+0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.1	+0.2	-0.8	+0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	-0.1	-0.3	-0.6	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.3	-0.0	-0.3	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.4	+0.1	-0.1	+1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.3	-0.4	+0.2	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.4	+0.0	-0.3	+0.6	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.1	+0.1	-0.2	+1.9
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	+0.2	+0.6	+0.9	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	-0.2	-0.4	+3.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.0	-0.1	-0.2	-0.4	+3.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.0	+0.1	+0.3	+3.5