Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS00065 and BPHYT_RS00070 are separated by 251 nucleotidesBPHYT_RS00070 and BPHYT_RS00075 overlap by 4 nucleotidesBPHYT_RS00075 and BPHYT_RS00080 overlap by 8 nucleotidesBPHYT_RS00080 and BPHYT_RS00085 are separated by 2 nucleotides BPHYT_RS00065: BPHYT_RS00065 - hypothetical protein, at 18,955 to 19,692 _RS00065 BPHYT_RS00070: BPHYT_RS00070 - hypothetical protein, at 19,944 to 21,122 _RS00070 BPHYT_RS00075: BPHYT_RS00075 - hypothetical protein, at 21,119 to 24,493 _RS00075 BPHYT_RS00080: BPHYT_RS00080 - hypothetical protein, at 24,486 to 25,133 _RS00080 BPHYT_RS00085: BPHYT_RS00085 - hypothetical protein, at 25,136 to 26,590 _RS00085
Group Condition BPHYT_RS00065 BPHYT_RS00070 BPHYT_RS00075 BPHYT_RS00080 BPHYT_RS00085
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.3 -0.7 -1.3 -0.8
carbon source Phenylacetic 5 mM (C) N.D. -0.5 -0.2 -0.7 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 -0.4 -0.9 -0.4
carbon source D-Glucose (C) N.D. -0.4 -0.1 -0.6 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.6 -0.5 -0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 -0.2 -0.5 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.3 -0.3 -0.9 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 -0.6 -0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 -0.3 -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.1 -0.3 -0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 -0.6 -0.1 -0.3
r2a control R2A control N.D. -0.4 -0.3 -0.2 -0.4
phage 36hr PHYTO3 MOI 1 N.D. -0.0 +0.0 -0.6 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 -0.3 -0.3 -0.2
phage 36hr PHYTO8 MOI 10 N.D. -0.0 +0.1 -1.1 -0.1
nitrogen source L-Asparagine (N) N.D. -0.2 +0.0 -0.9 +0.1
phage 24hr PHYTO1 MOI 10 N.D. -0.0 +0.1 -1.1 +0.0
phage PHYTO3 MOI 0.1 N.D. +0.1 -0.1 -1.1 +0.2
phage 36hr PHYTO2 MOI 1 N.D. +0.0 +0.3 -0.9 +0.2
phage 36hr PHYTO6 MOI 0.1 N.D. +0.1 +0.1 -0.9 +0.4
phage 36hr PHYTO1 MOI 1 N.D. +0.1 +0.3 -0.8 +0.1
phage 36hr PHYTO6 MOI 10 N.D. +0.1 +0.3 -0.9 +0.3
phage 24hr PHYTO3 MOI 1 N.D. +0.2 +0.2 -0.9 +0.4
phage 36hr PHYTO10 MOI 10 N.D. -0.0 +0.3 -0.6 +0.3
phage 24hr PHYTO6 MOI 0.1 N.D. +0.1 +0.4 -0.7 +0.2
phage 24hr PHYTO6 MOI 10 N.D. +0.2 -0.1 -0.8 +0.6
temperature LB 37C N.D. +0.0 -0.1 -0.5 +0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 +0.2 +0.7 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. +0.2 +0.4 +0.9 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.2 +0.2 +0.5 +0.3
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BPHYT_RS00065
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BPHYT_RS00070
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BPHYT_RS00080
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BPHYT_RS00085
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