Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS00060 and BPHYT_RS00065 overlap by 4 nucleotidesBPHYT_RS00065 and BPHYT_RS00070 are separated by 251 nucleotidesBPHYT_RS00070 and BPHYT_RS00075 overlap by 4 nucleotidesBPHYT_RS00075 and BPHYT_RS00080 overlap by 8 nucleotides BPHYT_RS00060: BPHYT_RS00060 - hypothetical protein, at 16,121 to 18,958 _RS00060 BPHYT_RS00065: BPHYT_RS00065 - hypothetical protein, at 18,955 to 19,692 _RS00065 BPHYT_RS00070: BPHYT_RS00070 - hypothetical protein, at 19,944 to 21,122 _RS00070 BPHYT_RS00075: BPHYT_RS00075 - hypothetical protein, at 21,119 to 24,493 _RS00075 BPHYT_RS00080: BPHYT_RS00080 - hypothetical protein, at 24,486 to 25,133 _RS00080
Group Condition BPHYT_RS00060 BPHYT_RS00065 BPHYT_RS00070 BPHYT_RS00075 BPHYT_RS00080
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. -0.3 -0.7 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. -0.3 -0.3 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. -0.1 -0.4 -0.9
carbon source Phenylacetic 5 mM (C) -0.1 N.D. -0.5 -0.2 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.6 -0.5 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.5 -0.6 -0.1
carbon source D-Glucose (C) -0.3 N.D. -0.4 -0.1 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -0.5 -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -0.4 -0.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -0.5 -0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -0.5 -0.4 -0.1
r2a control R2A control -0.3 N.D. -0.3 -0.3 -0.3
r2a control R2A control -0.3 N.D. -0.4 -0.3 -0.2
phage PHYTO3 MOI 0.1 -0.1 N.D. +0.1 -0.1 -1.1
phage 36hr PHYTO8 MOI 10 +0.0 N.D. -0.0 +0.1 -1.1
phage 24hr PHYTO1 MOI 10 +0.2 N.D. -0.0 +0.1 -1.1
phage 36hr PHYTO6 MOI 0.1 +0.1 N.D. +0.1 +0.1 -0.9
phage 24hr PHYTO3 MOI 1 +0.1 N.D. +0.2 +0.2 -0.9
phage 36hr PHYTO6 MOI 10 +0.1 N.D. +0.1 +0.3 -0.9
phage 36hr PHYTO1 MOI 1 +0.2 N.D. +0.1 +0.3 -0.8
phage 36hr PHYTO2 MOI 1 +0.4 N.D. +0.0 +0.3 -0.9
phage 36hr PHYTO2 MOI 1 +0.2 N.D. +0.1 +0.4 -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. +0.2 +0.2 +0.7
supernatant control Vogels_fungal_media 0.1X +0.3 N.D. +0.3 +0.5 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.3 N.D. +0.3 +0.6 -0.2
supernatant control Vogels_fungal_media 0.1X +0.3 N.D. +0.2 +0.4 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 N.D. +0.2 +0.2 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.2 N.D. +0.2 +0.3 +0.6
supernatant control Vogels_fungal_media; pH 5.5 +0.4 N.D. +0.2 +0.2 +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.4 N.D. +0.2 +0.4 +0.9
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BPHYT_RS00060
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BPHYT_RS00065
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BPHYT_RS00075
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BPHYT_RS00080
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