Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00050	BPHYT_RS00055	BPHYT_RS00060	BPHYT_RS00065	BPHYT_RS00070
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.1	-0.4	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.9	-0.2	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.0	-0.3	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.8	-0.2	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-1.3	-0.2	N.D.	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.0	-1.2	-0.2	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.8	-0.2	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.8	-0.2	N.D.	-0.3
nitrogen source	L-Lysine (N)	-0.5	-0.6	-0.2	N.D.	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.0	-0.1	N.D.	+0.0
carbon source	Tween 20 (C)	+0.0	-1.6	+0.1	N.D.	-0.1
carbon source	D-Glucose (C)	-0.4	-0.4	-0.3	N.D.	-0.4
nitrogen source	L-Alanine (N)	-0.1	-1.0	-0.2	N.D.	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.1	-0.3	N.D.	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.8	-0.1	-0.2	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.4	-0.3	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-1.2	-0.0	N.D.	-0.0
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.1	-1.3	-0.1	N.D.	+0.2
nophagecontrol	36hr Phyto Lib Only	-0.7	-0.5	+0.2	N.D.	+0.0
nitrogen source	L-Proline (N)	+0.2	-1.1	+0.0	N.D.	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	+0.4	-0.3	N.D.	-0.2
carbon source	Phenylacetic 5 mM (C)	-0.3	+0.6	-0.1	N.D.	-0.5
phage	36hr PHYTO2 MOI 1	-0.8	+0.4	+0.4	N.D.	+0.0
phage	24hr PHYTO10 MOI 10	-0.6	+0.7	-0.1	N.D.	+0.2
phage	24hr PHYTO4 MOI 0.1	-0.5	+0.7	+0.0	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.1	+0.1	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	+0.6	-0.1	N.D.	-0.1
phage	24hr PHYTO7 MOI 1	+0.2	+1.1	+0.2	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	+0.9	+0.2	N.D.	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	+1.1	+0.3	N.D.	+0.3