Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS20345 and BBR_RS20350 are separated by 3 nucleotidesBBR_RS20350 and BBR_RS20355 are separated by 304 nucleotidesBBR_RS20355 and BBR_RS20360 are separated by 8 nucleotidesBBR_RS20360 and BBR_RS20365 overlap by 4 nucleotides BBR_RS20345: BBR_RS20345 - ATP-binding protein, at 2,383,652 to 2,384,974 _RS20345 BBR_RS20350: BBR_RS20350 - class 1b ribonucleoside-diphosphate reductase subunit beta, at 2,384,978 to 2,385,970 _RS20350 BBR_RS20355: BBR_RS20355 - class 1b ribonucleoside-diphosphate reductase subunit alpha, at 2,386,275 to 2,388,470 _RS20355 BBR_RS20360: BBR_RS20360 - class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI, at 2,388,479 to 2,388,979 _RS20360 BBR_RS20365: BBR_RS20365 - glutaredoxin family protein, at 2,388,976 to 2,389,242 _RS20365
Group Condition BBR_RS20345 BBR_RS20350 BBR_RS20355 BBR_RS20360 BBR_RS20365
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.2 -4.5 -4.7 -4.4 -4.5
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet +0.1 -4.3 -4.3 -4.4 -3.6
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -0.0 -3.9 -3.8 -4.1 -4.2
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet +0.1 -3.5 -3.6 -3.5 -3.8
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.1 -3.3 -3.3 -3.1 -4.2
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.2 -3.1 -3.3 -3.2 -3.5
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.1 -1.3 -1.8 -2.1 -2.0
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet +0.1 -1.3 -1.5 -2.0 -2.2
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +0.1 -1.7 -1.7 -1.6 -2.0
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.1 -1.3 -1.4 -1.9 -2.2
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +0.1 -1.4 -1.5 -1.7 -1.7
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +0.2 -1.5 -1.6 -1.4 -1.4
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.2 -1.4 -1.4 -1.4 -1.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 +0.1 -1.0 -0.8 -1.1 -1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.1 -0.9 -1.0 -0.9 -0.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 +0.1 -1.0 -0.9 -1.1 -0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -0.1 -0.9 -0.8 -0.7 -0.7
mouse mouse 17; day 1; diet=StandardDiet_Methotrexate; sample=FecalPellet +0.0 -0.8 -0.7 -0.7 -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +0.1 -0.8 -0.8 -0.9 -0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day3 -0.0 -0.9 -0.7 -0.6 -0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 +0.2 -0.8 -0.7 -0.9 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 +0.1 -0.8 -0.7 -0.6 -0.7
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet +0.1 -0.7 -0.8 -0.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 +0.1 -0.7 -0.8 -0.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day2 -0.0 -0.8 -0.8 -0.6 -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.0 -0.7 -0.7 -0.5 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 +0.1 -0.5 -0.5 -0.6 -0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 +0.4 -0.6 -0.5 -0.9 -0.4
stress Recovery broth with Levofloxacin 0.2 mM +0.6 +0.6 +0.7 +0.6 +0.6
stress Recovery broth with Levofloxacin 0.2 mM +0.5 +0.7 +0.7 +0.7 +0.8
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