Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS20080 and BBR_RS20085 are separated by 394 nucleotidesBBR_RS20085 and BBR_RS20090 are separated by 71 nucleotidesBBR_RS20090 and BBR_RS20095 are separated by 95 nucleotidesBBR_RS20095 and BBR_RS20100 are separated by 165 nucleotides BBR_RS20080: BBR_RS20080 - ABC transporter substrate-binding protein, at 2,305,549 to 2,306,895 _RS20080 BBR_RS20085: BBR_RS20085 - histidine phosphatase family protein, at 2,307,290 to 2,308,003 _RS20085 BBR_RS20090: BBR_RS20090 - DUF4235 domain-containing protein, at 2,308,075 to 2,308,452 _RS20090 BBR_RS20095: BBR_RS20095 - NADPH-dependent oxidoreductase, at 2,308,548 to 2,309,315 _RS20095 BBR_RS20100: BBR_RS20100 - YhgE/Pip domain-containing protein, at 2,309,481 to 2,312,228 _RS20100
Group Condition BBR_RS20080 BBR_RS20085 BBR_RS20090 BBR_RS20095 BBR_RS20100
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +1.2 -3.4 +0.2 +1.2 +0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 +1.1 -3.2 +0.3 +1.3 +0.1
mouse mouse 1; day 1; diet=StandardDiet; sample=FecalPellet +0.3 -2.8 +0.1 +2.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 +1.2 -2.5 +0.6 +1.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +1.0 -2.9 +0.5 +2.2 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +1.1 -3.1 +0.5 +2.3 +0.1
mouse mouse 1; day 2; diet=StandardDiet; sample=FecalPellet +0.3 -2.5 +0.4 +2.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +1.2 -2.8 +0.7 +2.1 +0.0
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +5.6 -0.3 -1.1 -0.1 -1.8
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +1.6 -1.8 +0.5 +1.9 +0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +1.7 -1.6 +0.4 +1.9 +0.4
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +4.4 -0.6 -1.9 +1.1 -0.1
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.7 -1.3 -0.1 +3.2 +0.7
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 +3.6 -1.2 -0.2 +1.5 +0.3
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +7.1 -0.3 -0.6 +0.3 -2.6
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +4.6 -0.4 -1.0 +1.1 -0.2
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +4.9 +0.2 -0.4 -0.0 -0.4
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +5.3 +0.3 -1.8 +0.4 +0.2
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +4.9 -0.3 -1.0 +0.9 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 +2.1 -0.7 +0.1 +3.2 +0.8
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2 +4.2 -0.2 +0.4 +1.2 +0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 +6.2 -0.6 -0.4 +1.3 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 +7.2 -0.3 -0.1 +0.8 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 +6.9 -1.4 +0.2 +1.8 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 +7.0 -0.6 +0.0 +1.6 +0.3
stress Recovery broth with Metronidazole 0.03 mM +0.1 +1.0 +0.6 +7.7 -0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4 +9.0 -0.7 -0.2 +1.1 +0.2
stress Recovery broth with Nitrofurantoin 0.03 mM +0.1 +1.0 +0.6 +8.9 -0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 +11.0 -0.7 +0.1 +1.3 +0.4
stress Recovery broth with Nitrofurantoin 0.05 mM -0.2 +1.3 +1.3 +12.6 -0.6
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