Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS19785 and BBR_RS19790 are separated by 7 nucleotidesBBR_RS19790 and BBR_RS19795 are separated by 49 nucleotidesBBR_RS19795 and BBR_RS19800 are separated by 168 nucleotidesBBR_RS19800 and BBR_RS19805 are separated by 40 nucleotides BBR_RS19785: BBR_RS19785 - dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase, at 2,230,258 to 2,231,709 _RS19785 BBR_RS19790: BBR_RS19790 - dTDP-glucose 4,6-dehydratase, at 2,231,717 to 2,232,739 _RS19790 BBR_RS19795: BBR_RS19795 - hypothetical protein, at 2,232,789 to 2,234,879 _RS19795 BBR_RS19800: BBR_RS19800 - glycosyltransferase involved in cell wall biogenesis, at 2,235,048 to 2,235,989 _RS19800 BBR_RS19805: BBR_RS19805 - glycosyl hydrolase family 25,lysozyme, at 2,236,030 to 2,237,889 _RS19805
Group Condition BBR_RS19785 BBR_RS19790 BBR_RS19795 BBR_RS19800 BBR_RS19805
stress Recovery broth with Amoxicillin 0.003 mM N.D. N.D. -4.4 -3.8 -0.2
stress Recovery broth with Penicillin G 2e-04 mM N.D. N.D. -3.8 -3.8 -0.3
stress Recovery broth with Carbenicillin 0.001 mM N.D. N.D. -3.6 -2.9 -0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 N.D. N.D. -3.4 -2.9 -0.2
stress Recovery broth with Ticarcillin 4e-04 mM N.D. N.D. -3.0 -2.9 -0.4
nutrient dropout CDM1 without Adenine N.D. N.D. -3.2 -1.7 -0.9
stress Recovery broth with Aztreonam 0.2 mM N.D. N.D. -3.0 -2.5 -0.3
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. N.D. -4.0 -1.6 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. N.D. -4.6 -1.0 +0.1
stress Recovery broth with Bacitracin 0.01 mM N.D. N.D. -2.7 -2.9 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 N.D. N.D. -4.6 -0.8 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 N.D. N.D. -4.5 -0.8 -0.2
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet N.D. N.D. -4.2 -0.9 -0.3
stress Recovery broth with Penicillin G 1e-04 mM N.D. N.D. -2.8 -2.3 -0.3
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet N.D. N.D. -4.4 -0.7 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. N.D. -4.3 -0.9 -0.0
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet N.D. N.D. -3.7 -1.2 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 N.D. N.D. -4.2 -0.9 -0.1
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. N.D. -4.1 -0.7 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. N.D. -3.8 -1.0 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. N.D. -3.9 -0.8 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 N.D. N.D. -3.7 -1.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. N.D. -3.9 -1.0 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. N.D. -3.8 -1.1 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 N.D. N.D. -3.9 -1.0 -0.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. N.D. -2.8 -1.8 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. N.D. -3.8 -1.0 -0.1
stress Recovery broth with Bacitracin 0.01 mM N.D. N.D. -2.5 -2.5 +0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 N.D. N.D. -3.7 -1.1 +0.1
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. N.D. -3.9 -1.0 +0.4
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