Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS19735 and BBR_RS19740 are separated by 30 nucleotidesBBR_RS19740 and BBR_RS19745 are separated by 144 nucleotidesBBR_RS19745 and BBR_RS19750 are separated by 77 nucleotidesBBR_RS19750 and BBR_RS19755 are separated by 26 nucleotides BBR_RS19735: BBR_RS19735 - glycosyltransferase involved in cell wall biogenesis, at 2,214,952 to 2,216,001 _RS19735 BBR_RS19740: BBR_RS19740 - DUF2142 domain-containing protein, at 2,216,032 to 2,217,384 _RS19740 BBR_RS19745: BBR_RS19745 - LTA synthase family protein, at 2,217,529 to 2,219,781 _RS19745 BBR_RS19750: BBR_RS19750 - LTA synthase family protein, at 2,219,859 to 2,222,153 _RS19750 BBR_RS19755: BBR_RS19755 - glycosyl transferase, at 2,222,180 to 2,223,703 _RS19755
Group Condition BBR_RS19735 BBR_RS19740 BBR_RS19745 BBR_RS19750 BBR_RS19755
nutrient dropout CDM1 without Adenine N.D. -4.1 -2.0 -2.1 -4.6
nutrient dropout CDM1 without Arginine N.D. -5.5 -1.6 -1.5 -3.4
nutrient dropout CDM1 without Uracil N.D. -4.5 -1.9 -1.9 -3.6
nutrient dropout control CDM1 N.D. -5.2 -1.5 -1.5 -3.7
nutrient dropout CDM1 without LipoicAcid N.D. -5.2 -1.8 -1.6 -3.2
nutrient dropout CDM1 without Isoleucine N.D. -5.0 -1.9 -1.7 -3.3
nutrient dropout CDM1 without Lysine N.D. -5.1 -1.6 -1.6 -3.4
nutrient dropout control CDM1 N.D. -5.3 -1.6 -1.4 -3.3
nutrient dropout control CDM1 N.D. -5.3 -1.7 -1.4 -3.2
nutrient dropout CDM1 without Pantothenate N.D. -5.3 -1.6 -1.5 -3.3
nutrient dropout CDM1 without Alanine N.D. -4.9 -1.7 -1.7 -3.3
nutrient dropout CDM1 without Proline N.D. -4.7 -1.9 -1.8 -3.0
nutrient dropout CDM1 without Cyanocobalamin N.D. -5.1 -1.5 -1.4 -3.3
nutrient dropout CDM1 without Cytosine N.D. -5.0 -1.7 -1.7 -2.8
nutrient dropout CDM1 without Pyridoxamine N.D. -4.2 -1.7 -1.8 -3.7
nutrient dropout CDM1 without Threonine N.D. -4.9 -1.4 -1.6 -3.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 N.D. -6.3 -0.3 -0.3 -4.3
nutrient dropout CDM1 without Nicotinate N.D. -5.1 -1.6 -1.4 -3.2
nutrient dropout CDM1 without Asparagine N.D. -4.0 -1.6 -1.9 -3.8
nutrient dropout control CDM1 N.D. -4.7 -1.8 -1.5 -3.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -6.1 -0.0 -0.1 -5.0
nutrient dropout CDM1 without FolicAcid N.D. -5.1 -1.5 -1.4 -3.2
nutrient dropout CDM1 without Aspartate N.D. -4.9 -1.5 -1.5 -3.2
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. -6.3 +0.1 +0.1 -5.0
nutrient dropout CDM1 without Thiamine N.D. -5.0 -1.6 -1.5 -3.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. -6.2 -0.6 -0.4 -3.8
nutrient dropout CDM1 without Glutamine N.D. -4.9 -1.7 -1.5 -2.8
nutrient dropout CDM1 without Tryptophan N.D. -5.5 -1.3 -1.3 -2.9
nutrient dropout control CDM1 N.D. -5.0 -1.4 -1.4 -3.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. -6.2 -0.6 -0.5 -3.6
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