Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS19545 and BBR_RS19550 overlap by 4 nucleotidesBBR_RS19550 and BBR_RS19555 are separated by 95 nucleotidesBBR_RS19555 and BBR_RS19560 are separated by 2 nucleotidesBBR_RS19560 and BBR_RS19565 are separated by 207 nucleotides BBR_RS19545: BBR_RS19545 - PTS glucose-like IIB component, at 2,169,069 to 2,169,563 _RS19545 BBR_RS19550: BBR_RS19550 - PTS N-acetylglucosamine transporter subunit IIABC, at 2,169,560 to 2,170,063 _RS19550 BBR_RS19555: BBR_RS19555 - diaminopimelate decarboxylase, at 2,170,159 to 2,171,781 _RS19555 BBR_RS19560: BBR_RS19560 - arginine--tRNA ligase, at 2,171,784 to 2,173,646 _RS19560 BBR_RS19565: BBR_RS19565 - TetR/AcrR family transcriptional regulator, at 2,173,854 to 2,174,561 _RS19565
Group Condition BBR_RS19545 BBR_RS19550 BBR_RS19555 BBR_RS19560 BBR_RS19565
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -0.2 +0.3 -6.3 N.D. -0.2
nutrient dropout CDM1 without FolicAcid -0.1 +0.0 -6.1 N.D. +0.1
nutrient dropout CDM1 without FolicAcid +0.0 +0.1 -6.1 N.D. -0.0
nutrient dropout CDM1 without Lysine -0.1 +0.5 -6.4 N.D. +0.0
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet +0.0 -0.0 -5.8 N.D. -0.1
nutrient dropout CDM1 without Phenylalanine -0.2 +0.5 -5.5 N.D. -0.6
nutrient dropout CDM1 without Lysine +0.0 +0.3 -6.3 N.D. +0.2
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -0.2 +0.2 -5.5 N.D. -0.2
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -0.1 -0.1 -5.3 N.D. -0.2
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.4 +0.2 -4.7 N.D. -0.7
nutrient dropout CDM1 without Guanine -0.1 +0.4 -5.7 N.D. -0.1
nutrient dropout CDM1 without Serine +0.1 +0.4 -5.6 N.D. -0.3
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.0 +0.0 -5.7 N.D. +0.2
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -0.1 +0.1 -5.6 N.D. +0.2
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.1 +0.0 -4.6 N.D. -0.7
nutrient dropout CDM1 without Glycine -0.3 +0.2 -5.1 N.D. -0.2
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -0.1 +0.1 -5.4 N.D. +0.3
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.0 +0.1 -5.5 N.D. +0.3
nutrient dropout CDM1 without Tyrosine -0.1 +0.4 -5.2 N.D. -0.1
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +0.1 +0.1 -5.1 N.D. +0.1
nutrient dropout CDM1 without Phenylalanine +0.0 +0.4 -5.4 N.D. +0.0
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet +0.2 +0.3 -5.5 N.D. +0.2
nutrient dropout CDM1 without Valine -0.2 +0.5 -4.9 N.D. -0.0
nutrient dropout CDM1 without Threonine +0.1 +0.3 -5.0 N.D. -0.0
nutrient dropout CDM1 without Serine +0.1 +0.5 -5.2 N.D. +0.0
nutrient dropout CDM1 without Adenine +0.0 +0.6 -4.7 N.D. -0.4
nutrient dropout CDM1 without Asparagine -0.0 +0.6 -4.9 N.D. +0.0
nutrient dropout control CDM1 -0.1 +0.4 -4.8 N.D. +0.2
nutrient dropout CDM1 without Uracil +0.1 +0.5 -4.7 N.D. -0.2
nutrient dropout CDM1 without Glycine +0.5 +0.4 -4.6 N.D. +0.3
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