Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS19370 and BBR_RS19375 are separated by 39 nucleotidesBBR_RS19375 and BBR_RS19380 overlap by 8 nucleotidesBBR_RS19380 and BBR_RS19385 are separated by 512 nucleotidesBBR_RS19385 and BBR_RS19390 are separated by 1 nucleotides BBR_RS19370: BBR_RS19370 - type I polyketide synthase, at 2,119,261 to 2,128,743 _RS19370 BBR_RS19375: BBR_RS19375 - acyl-CoA carboxylase subunit beta, at 2,128,783 to 2,130,405 _RS19375 BBR_RS19380: BBR_RS19380 - ATP-grasp domain-containing protein, at 2,130,398 to 2,132,278 _RS19380 BBR_RS19385: BBR_RS19385 - biotin biosynthesis protein BioY, at 2,132,791 to 2,133,390 _RS19385 BBR_RS19390: BBR_RS19390 - hypothetical protein, at 2,133,392 to 2,134,282 _RS19390
Group Condition BBR_RS19370 BBR_RS19375 BBR_RS19380 BBR_RS19385 BBR_RS19390
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 -1.2 -4.3 N.D. +0.2 -3.6
nutrient dropout CDM1 without Glutathione -2.9 -3.4 N.D. +0.1 -2.8
nutrient dropout control CDM1 -3.0 -3.3 N.D. +0.2 -2.7
nutrient dropout CDM1 without Glutathione -1.3 -4.1 N.D. +0.3 -3.5
nutrient dropout CDM1 without Threonine -3.0 -3.3 N.D. +0.4 -2.7
nutrient dropout CDM1 without Pantothenate -2.7 -3.3 N.D. +0.3 -2.7
nutrient dropout CDM1 without Nicotinate -2.2 -3.4 N.D. +0.1 -2.8
nutrient dropout CDM1 without Serine -2.1 -3.3 N.D. +0.2 -2.7
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -3.0 -2.2 N.D. -0.1 -2.7
nutrient dropout CDM1 without FolicAcid -2.2 -3.3 N.D. +0.2 -2.7
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 -0.9 -4.3 N.D. +0.1 -2.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -0.5 -4.0 N.D. +0.1 -3.3
carbon source reconstituted MRS with Lacto-N-tetraose 7.1 mM -1.3 -3.9 N.D. -0.2 -2.2
nutrient dropout CDM1 without Aspartate -1.7 -3.4 N.D. +0.2 -2.8
nutrient dropout control CDM1 -2.7 -3.3 N.D. +0.2 -1.8
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -2.2 -3.1 N.D. +0.2 -2.5
nutrient dropout CDM1 without Uracil -2.3 -3.1 N.D. +0.4 -2.5
nutrient dropout control CDM1 -2.5 -4.0 N.D. +0.2 -1.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.7 -3.8 N.D. +0.2 -3.2
nutrient dropout CDM1 without Valine -1.8 -3.3 N.D. +0.4 -2.7
nutrient dropout CDM1 without Adenine -2.3 -3.0 N.D. +0.2 -2.4
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -2.5 -2.1 N.D. -0.2 -2.7
nutrient dropout CDM1 without Methionine -1.8 -3.3 N.D. +0.3 -2.7
nutrient dropout CDM1 without Proline -2.9 -3.1 N.D. +0.3 -1.6
nutrient dropout CDM1 without Cytosine -2.4 -3.2 N.D. +0.3 -2.0
nutrient dropout CDM1 without Tyrosine -2.5 -2.2 N.D. +0.2 -2.8
nutrient dropout CDM1 without Guanine -1.6 -3.3 N.D. +0.3 -2.7
nutrient dropout CDM1 without Leucine -2.8 -2.1 N.D. +0.3 -2.7
nutrient dropout control CDM1 -2.4 -2.5 N.D. +0.3 -2.7
nutrient dropout CDM1 without Histidine -2.4 -2.0 N.D. +0.4 -2.6
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