Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS19305	BBR_RS19310	BBR_RS19315	BBR_RS19320	BBR_RS19325
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-3.2	+0.1	+0.1	-0.3	-1.3
nutrient dropout	CDM1 without Phenylalanine	-0.7	-0.2	-1.0	-0.1	-1.6
nutrient dropout control	CDM1	-0.4	+0.1	-0.4	-0.1	-2.6
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2	+0.3	+0.1	-0.4	+0.3	-3.6
nutrient dropout control	CDM1	-0.0	-0.1	-0.2	-0.1	-2.6
nutrient dropout control	CDM1	-0.1	-0.2	-0.5	-0.1	-1.9
nutrient dropout	CDM1 without Adenine	-0.5	-0.1	-0.4	+0.0	-1.6
nutrient dropout	CDM1 without Adenine	-0.3	+0.0	-0.3	+0.0	-2.1
nutrient dropout	CDM1 without Lysine	-0.1	-0.1	-0.1	+0.0	-2.4
nutrient dropout	CDM1 without Valine	-0.1	-0.1	-0.5	+0.1	-1.9
nutrient dropout	CDM1 without Threonine	-0.2	-0.1	-0.3	-0.0	-1.9
nutrient dropout	CDM1 without Glutamine	-0.0	-0.0	-0.2	+0.1	-2.3
nutrient dropout	CDM1 without Leucine	-0.2	-0.3	-0.5	-0.2	-1.4
nutrient dropout	CDM1 without Glycine	-0.5	+0.1	+0.2	-0.4	-1.9
mouse	diet=StandardDiet; sample=FecalPellet; mouse4; day1	+0.1	+0.1	-0.3	+0.2	-2.5
nutrient dropout	CDM1 without Methionine	+0.0	-0.1	-0.3	-0.1	-1.8
nutrient dropout	CDM1 without Cyanocobalamin	-0.1	-0.1	-0.5	+0.1	-1.7
stress	MRS with Chenodeoxycholic 500 ug/ml	-0.0	-0.0	-0.6	+0.1	-1.8
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-1.6	+0.1	+0.4	+0.0	-0.9
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.5	-0.1	-0.4	+0.0	-1.9
stress	Recovery broth with 3-Acetylpyridine 0.04 mM	+0.0	+0.3	+0.1	+0.3	-2.0
mrs timecourse	MRS Time48hr	-0.0	+0.4	-0.5	+0.6	-1.0
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	+0.8	+0.3	+0.5	-0.4	-0.5
stress	Recovery broth with Ciprofloxacin 0.1 mM	-0.1	+0.3	-0.8	+0.4	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day5	+0.9	-0.4	-0.3	-0.2	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6	+0.4	-0.2	-0.6	+0.0	+1.5
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4	+0.4	+0.2	+0.2	-0.1	+1.7
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	+0.8	+0.3	-0.1	-0.1	+1.5
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	+0.3	+0.9	+0.6	+0.7	+0.3
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	+0.7	+0.3	+0.0	-0.1	+1.8