Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS19065 and BBR_RS19070 are separated by 121 nucleotidesBBR_RS19070 and BBR_RS19075 are separated by 61 nucleotidesBBR_RS19075 and BBR_RS19080 are separated by 4 nucleotidesBBR_RS19080 and BBR_RS19085 are separated by 1 nucleotides BBR_RS19065: BBR_RS19065 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,054,891 to 2,056,114 _RS19065 BBR_RS19070: BBR_RS19070 - 50S ribosomal protein L33, at 2,056,236 to 2,056,403 _RS19070 BBR_RS19075: BBR_RS19075 - tRNA-Met, at 2,056,465 to 2,056,541 _RS19075 BBR_RS19080: BBR_RS19080 - tRNA-Thr, at 2,056,546 to 2,056,617 _RS19080 BBR_RS19085: BBR_RS19085 - tRNA-Tyr, at 2,056,619 to 2,056,700 _RS19085
Group Condition BBR_RS19065 BBR_RS19070 BBR_RS19075 BBR_RS19080 BBR_RS19085
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 N.D. -4.1 N.D. N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 N.D. -4.1 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 N.D. -4.1 N.D. N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 N.D. -4.0 N.D. N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 N.D. -4.0 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day1 N.D. -4.0 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 N.D. -4.0 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 N.D. -4.0 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -4.0 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 N.D. -3.9 N.D. N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 N.D. -3.9 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 N.D. -3.9 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. -3.9 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 N.D. -3.9 N.D. N.D. N.D.
mouse coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.9 N.D. N.D. N.D.
nutrient dropout CDM1 without Isoleucine N.D. -3.9 N.D. N.D. N.D.
mouse mouse 16; day 1; diet=StandardDiet_Methotrexate; sample=FecalPellet N.D. -3.8 N.D. N.D. N.D.
mouse mouse 3; day 1; diet=StandardDiet; sample=FecalPellet N.D. -3.8 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. -3.7 N.D. N.D. N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.7 N.D. N.D. N.D.
mouse coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.6 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -3.6 N.D. N.D. N.D.
nutrient dropout CDM1 without Phenylalanine N.D. -3.5 N.D. N.D. N.D.
mouse mouse 17; day 1; diet=StandardDiet_Methotrexate; sample=FecalPellet N.D. -3.5 N.D. N.D. N.D.
mouse mouse 4; day 2; diet=StandardDiet; sample=FecalPellet N.D. -3.5 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 N.D. -3.5 N.D. N.D. N.D.
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet N.D. -3.4 N.D. N.D. N.D.
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -3.4 N.D. N.D. N.D.
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.4 N.D. N.D. N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. -3.4 N.D. N.D. N.D.
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