Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS18955 and BBR_RS18960 are separated by 529 nucleotidesBBR_RS18960 and BBR_RS18965 are separated by 57 nucleotidesBBR_RS18965 and BBR_RS18975 are separated by 822 nucleotidesBBR_RS18975 and BBR_RS18980 are separated by 22 nucleotides BBR_RS18955: BBR_RS18955 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 2,027,950 to 2,030,679 _RS18955 BBR_RS18960: BBR_RS18960 - ROK family transcriptional regulator, at 2,031,209 to 2,032,342 _RS18960 BBR_RS18965: BBR_RS18965 - glycogen debranching enzyme GlgX, at 2,032,400 to 2,034,916 _RS18965 BBR_RS18975: BBR_RS18975 - 30S ribosomal protein S9, at 2,035,739 to 2,036,230 _RS18975 BBR_RS18980: BBR_RS18980 - 50S ribosomal protein L13, at 2,036,253 to 2,036,702 _RS18980
Group Condition BBR_RS18955 BBR_RS18960 BBR_RS18965 BBR_RS18975 BBR_RS18980
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.2 +0.0 -0.1 N.D. N.D.
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.1 -0.0 +0.0 N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -6.9 +0.0 -0.2 N.D. N.D.
nutrient dropout control CDM1 -6.6 -0.3 +0.2 N.D. N.D.
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.1 +0.3 +0.0 N.D. N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.0 +0.2 +0.1 N.D. N.D.
nutrient dropout control CDM1 -6.4 -0.3 +0.1 N.D. N.D.
nutrient dropout CDM1 without Thiamine -6.7 -0.2 +0.3 N.D. N.D.
nutrient dropout control CDM1 -6.5 -0.2 +0.1 N.D. N.D.
nutrient dropout control CDM1 -6.6 -0.1 +0.2 N.D. N.D.
nutrient dropout CDM1 without Tyrosine -6.5 -0.2 +0.3 N.D. N.D.
nutrient dropout CDM1 without FolicAcid -6.5 -0.1 +0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -6.2 +0.1 -0.2 N.D. N.D.
nutrient dropout CDM1 without Proline -6.2 -0.3 +0.2 N.D. N.D.
nutrient dropout CDM1 without Valine -6.2 -0.3 +0.2 N.D. N.D.
nutrient dropout CDM1 without Histidine -6.4 -0.1 +0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -6.4 +0.3 -0.1 N.D. N.D.
nutrient dropout CDM1 without Adenine -6.3 -0.2 +0.3 N.D. N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -6.6 +0.4 -0.1 N.D. N.D.
nutrient dropout CDM1 without Threonine -6.4 -0.0 +0.3 N.D. N.D.
nutrient dropout CDM1 without Tryptophan -6.4 -0.1 +0.3 N.D. N.D.
nutrient dropout control CDM1 -6.2 -0.2 +0.2 N.D. N.D.
nutrient dropout CDM1 without Cyanocobalamin -6.3 -0.2 +0.3 N.D. N.D.
nutrient dropout CDM1 without Aspartate -6.4 -0.1 +0.3 N.D. N.D.
nutrient dropout CDM1 without Cytosine -6.2 -0.2 +0.3 N.D. N.D.
nutrient dropout CDM1 without Pyridoxamine -6.1 -0.3 +0.3 N.D. N.D.
nutrient dropout CDM1 without Serine -6.2 -0.1 +0.3 N.D. N.D.
nutrient dropout control CDM1 -6.0 -0.2 +0.3 N.D. N.D.
nutrient dropout CDM1 without LipoicAcid -6.1 -0.2 +0.3 N.D. N.D.
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -6.3 +0.4 -0.0 N.D. N.D.
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