Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS18580 and BBR_RS18585 are separated by 191 nucleotidesBBR_RS18585 and BBR_RS18590 are separated by 369 nucleotidesBBR_RS18590 and BBR_RS18595 are separated by 137 nucleotidesBBR_RS18595 and BBR_RS18600 are separated by 157 nucleotides BBR_RS18580: BBR_RS18580 - sensor histidine kinase, at 1,953,245 to 1,954,438 _RS18580 BBR_RS18585: BBR_RS18585 - phosphate transport system regulatory protein PhoU, at 1,954,630 to 1,955,304 _RS18585 BBR_RS18590: BBR_RS18590 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 1,955,674 to 1,956,414 _RS18590 BBR_RS18595: BBR_RS18595 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 1,956,552 to 1,957,517 _RS18595 BBR_RS18600: BBR_RS18600 - lysine--tRNA ligase, at 1,957,675 to 1,959,357 _RS18600
Group Condition BBR_RS18580 BBR_RS18585 BBR_RS18590 BBR_RS18595 BBR_RS18600
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.1 N.D. N.D. -7.9 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 +0.0 N.D. N.D. -7.9 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.1 N.D. N.D. -7.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -0.1 N.D. N.D. -7.5 N.D.
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.2 N.D. N.D. -7.3 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -0.0 N.D. N.D. -7.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.2 N.D. N.D. -7.5 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -0.1 N.D. N.D. -7.2 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.1 N.D. N.D. -7.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -0.2 N.D. N.D. -7.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.1 N.D. N.D. -7.3 N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.2 N.D. N.D. -6.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -0.1 N.D. N.D. -7.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -0.1 N.D. N.D. -7.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -0.0 N.D. N.D. -7.0 N.D.
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.0 N.D. N.D. -7.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 +0.1 N.D. N.D. -7.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.0 N.D. N.D. -6.9 N.D.
mouse mouse 1; day 2; diet=StandardDiet; sample=FecalPellet +0.0 N.D. N.D. -6.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -0.1 N.D. N.D. -6.8 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -0.0 N.D. N.D. -6.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 +0.0 N.D. N.D. -6.8 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -0.2 N.D. N.D. -6.5 N.D.
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.1 N.D. N.D. -6.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day2 +0.2 N.D. N.D. -6.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day4 -0.1 N.D. N.D. -6.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 +0.1 N.D. N.D. -6.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.1 N.D. N.D. -6.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -0.1 N.D. N.D. -6.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.2 N.D. N.D. -6.4 N.D.
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