Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS18475 and BBR_RS18480 are separated by 199 nucleotidesBBR_RS18480 and BBR_RS18485 are separated by 80 nucleotidesBBR_RS18485 and BBR_RS18490 are separated by 226 nucleotidesBBR_RS18490 and BBR_RS18495 are separated by 229 nucleotides BBR_RS18475: BBR_RS18475 - DUF4981 domain-containing protein, at 1,930,417 to 1,933,554 _RS18475 BBR_RS18480: BBR_RS18480 - LacI family DNA-binding transcriptional regulator, at 1,933,754 to 1,934,764 _RS18480 BBR_RS18485: BBR_RS18485 - IS30 family transposase, at 1,934,845 to 1,935,042 _RS18485 BBR_RS18490: BBR_RS18490 - sugar ABC transporter substrate-binding protein, at 1,935,269 to 1,936,594 _RS18490 BBR_RS18495: BBR_RS18495 - ROK family protein, at 1,936,824 to 1,937,999 _RS18495
Group Condition BBR_RS18475 BBR_RS18480 BBR_RS18485 BBR_RS18490 BBR_RS18495
carbon source reconstituted MRS with Lacto-N-neotetraose 7.1 mM -2.3 +0.0 -0.2 -2.9 -0.7
carbon source reconstituted MRS with Lacto-N-neotetraose 7.1 mM -1.6 +0.0 +0.1 -3.0 -0.9
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.1 -3.1 -1.8 -0.2 -0.5
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.0 +0.1 -0.8 -0.1 -2.9
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.0 +0.6 -1.6 -0.2 -2.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.1 -0.7 -1.0 +0.1 -1.0
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 +0.1 +0.9 -1.3 -0.7 -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -0.3 -1.7 +0.9 -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.1 -1.5 +1.0 -0.2 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 +0.5 +1.0 -1.5 -0.2 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -0.0 -1.4 +0.2 +0.1 +0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 -0.0 -1.6 +1.0 -0.0 +1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 -0.0 -1.1 +0.7 -0.0 +1.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -0.1 -1.0 +0.7 +0.2 +0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -0.3 -0.8 +0.9 +0.1 +1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -0.1 -0.8 +0.5 -0.2 +1.8
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +0.3 -1.1 +1.0 +0.2 +0.8
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +0.3 -1.0 +0.8 +0.2 +0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 -0.1 -1.2 +0.6 -0.1 +2.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -0.1 -0.4 +0.5 -0.3 +1.7
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -0.0 -0.7 +0.5 -0.2 +2.0
stress Recovery broth with Streptomycin 0.3 mM +0.7 -0.8 +0.6 +0.1 +1.1
nutrient dropout CDM1 without Asparagine +0.4 +0.4 +0.3 -0.6 +1.1
nutrient dropout CDM1 without Uracil +0.4 +0.5 +0.4 -0.4 +0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 +0.0 -1.0 +1.4 -0.2 +1.9
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +0.1 -0.5 +0.9 -0.2 +2.0
carbon source reconstituted MRS with Melibiose 29 mM +0.3 +3.4 -0.1 -0.1 -0.1
carbon source reconstituted MRS with Melibiose 29 mM +0.2 +3.7 -0.1 -0.0 -0.1
carbon source reconstituted MRS with D-Galactose 56 mM +0.2 +9.2 -0.0 -0.0 +0.5
carbon source reconstituted MRS with D-Galactose 56 mM +0.1 +9.8 +0.3 -0.1 +0.6
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