Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS18185 and BBR_RS18190 overlap by 14 nucleotidesBBR_RS18190 and BBR_RS18195 are separated by 35 nucleotidesBBR_RS18195 and BBR_RS18200 are separated by 24 nucleotidesBBR_RS18200 and BBR_RS18205 overlap by 1 nucleotides BBR_RS18185: BBR_RS18185 - hypoxanthine phosphoribosyltransferase, at 1,866,119 to 1,866,682 _RS18185 BBR_RS18190: BBR_RS18190 - tRNA lysidine(34) synthetase TilS, at 1,866,669 to 1,867,820 _RS18190 BBR_RS18195: BBR_RS18195 - hypothetical protein, at 1,867,856 to 1,869,352 _RS18195 BBR_RS18200: BBR_RS18200 - hypothetical protein, at 1,869,377 to 1,871,047 _RS18200 BBR_RS18205: BBR_RS18205 - ABC transporter ATP-binding protein, at 1,871,047 to 1,872,129 _RS18205
Group Condition BBR_RS18185 BBR_RS18190 BBR_RS18195 BBR_RS18200 BBR_RS18205
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -4.5 N.D. -1.7 +0.2 -0.3
mouse coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.8 N.D. -0.4 +0.1 -0.0
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.4 N.D. -0.7 -0.0 -0.0
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.4 N.D. -0.8 +0.0 +0.1
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -3.5 N.D. -2.3 +0.0 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -4.3 N.D. -1.1 -0.1 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -4.1 N.D. -1.5 +0.2 -0.1
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -3.1 N.D. -2.4 -0.1 +0.0
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.1 N.D. -0.4 +0.1 +0.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -3.6 N.D. -1.2 +0.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -4.1 N.D. -1.1 +0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -4.2 N.D. -1.2 +0.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -4.0 N.D. -1.0 +0.0 -0.0
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.6 N.D. -0.5 +0.1 +0.0
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.1 N.D. -0.7 +0.1 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -3.1 N.D. -1.9 +0.0 +0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -4.6 N.D. -0.6 +0.2 +0.2
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.1 N.D. -0.6 -0.1 -0.0
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -1.1 N.D. -3.3 -0.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -3.0 N.D. -1.4 +0.0 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 -3.1 N.D. -1.4 +0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -3.4 N.D. -0.9 +0.1 -0.3
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -0.6 N.D. -3.7 -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -3.8 N.D. -0.8 +0.1 +0.2
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -4.6 N.D. -0.0 +0.0 +0.3
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -2.5 N.D. -1.6 +0.3 -0.3
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -3.8 N.D. +0.3 -0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -3.2 N.D. -1.1 +0.4 -0.0
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -2.1 N.D. -2.1 +0.3 +0.2
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -1.8 N.D. -2.3 +0.1 +0.4
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