Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS18145 and BBR_RS18150 are separated by 534 nucleotidesBBR_RS18150 and BBR_RS18155 are separated by 216 nucleotidesBBR_RS18155 and BBR_RS18160 are separated by 40 nucleotidesBBR_RS18160 and BBR_RS18165 are separated by 94 nucleotides BBR_RS18145: BBR_RS18145 - MFS transporter, at 1,854,663 to 1,856,468 _RS18145 BBR_RS18150: BBR_RS18150 - energy-dependent translational throttle protein EttA, at 1,857,003 to 1,858,682 _RS18150 BBR_RS18155: BBR_RS18155 - acyl-CoA thioesterase II, at 1,858,899 to 1,859,804 _RS18155 BBR_RS18160: BBR_RS18160 - DUF3180 domain-containing protein, at 1,859,845 to 1,860,372 _RS18160 BBR_RS18165: BBR_RS18165 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,860,467 to 1,862,077 _RS18165
Group Condition BBR_RS18145 BBR_RS18150 BBR_RS18155 BBR_RS18160 BBR_RS18165
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -1.5 N.D. -1.5 -0.3 -1.2
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -1.1 N.D. -1.9 -0.9 -0.3
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.4 N.D. -1.9 -0.8 -1.0
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -0.7 N.D. -1.9 -0.7 -0.8
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.6 N.D. -0.8 -1.7 -0.3
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -0.2 N.D. -1.8 -0.8 -0.3
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -1.2 N.D. -0.1 -0.7 -1.2
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -0.1 N.D. -1.3 -0.7 -0.8
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -0.3 N.D. -1.0 -0.3 -0.3
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.0 N.D. -0.4 -0.9 -0.7
stress Recovery broth with Streptomycin 0.3 mM -0.2 N.D. -0.4 -0.8 -0.4
stress Recovery broth with Streptomycin 0.3 mM +0.1 N.D. -0.1 -1.8 +0.1
stress Recovery broth with Gentamicin 0.4 mM -0.0 N.D. -0.7 -0.6 -0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -0.3 N.D. -0.6 -0.6 -0.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -0.1 N.D. -0.6 -0.5 -0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -0.2 N.D. -0.6 -0.9 +0.3
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.4 N.D. +2.1 -1.3 -0.7
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -0.1 N.D. +0.2 -0.6 -0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.1 N.D. -0.2 -1.2 +0.3
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -0.1 N.D. +0.3 -0.6 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 -0.1 N.D. -0.1 -1.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.0 N.D. +0.4 -1.3 +0.1
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.0 N.D. +1.6 -0.7 -0.7
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos +0.2 N.D. +0.1 -1.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 +0.1 N.D. +0.1 -1.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 +0.1 N.D. +0.0 -1.0 +0.4
nutrient dropout CDM1 without Phenylalanine +0.4 N.D. +0.7 -1.3 +0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 +0.2 N.D. +0.7 -0.5 -0.3
stress Recovery broth with 3-Acetylpyridine 0.04 mM +0.3 N.D. -0.5 +0.4 +0.7
nutrient dropout CDM1 without Adenine +0.2 N.D. +0.4 -0.3 +0.6
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