Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS17965	BBR_RS17970	BBR_RS17975	BBR_RS17980	BBR_RS17985
mouse coculture	cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482	+0.2	-6.5	+0.1	-0.0	+0.0
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.1	-3.7	-1.6	-0.3	-0.3
mouse coculture	cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482	+0.5	-6.3	+0.1	-0.2	+0.0
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-0.1	-5.6	+0.1	+0.1	-0.1
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.1	-3.9	-1.5	+0.3	-0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-0.3	-5.1	+0.1	+0.4	-0.1
mouse	mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet	+0.0	-4.8	-0.1	+0.0	-0.0
stress	Recovery broth with Moxifloxacin 0.004 mM	-0.2	-0.1	+0.2	+0.1	-4.7
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2	+0.1	-4.7	+0.0	-0.2	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day1	+0.0	-3.9	-0.2	-0.2	-0.0
mouse coculture	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.2	-4.0	-0.1	+0.0	+0.0
mouse coculture	cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.2	-4.0	+0.1	-0.1	-0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3	-0.2	-3.7	-0.3	-0.0	+0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day1	-0.1	-3.2	-0.5	-0.3	+0.1
mouse	mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet	+0.1	-3.9	-0.0	+0.1	-0.1
mouse coculture	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-4.1	+0.1	+0.3	+0.1
mouse coculture	cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-4.2	+0.1	+0.4	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3	-0.5	-2.5	-0.2	-0.4	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4	+0.0	-2.6	-0.3	-0.4	-0.2
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	+0.2	-3.3	-0.0	+0.0	+0.1
mouse coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-3.3	-0.1	+0.4	+0.1
chicken	chicken 1; day 2; diet=StandardDiet; sample=FecalPellet	-0.2	-3.0	+0.4	-0.1	-0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	+0.3	-2.9	+0.2	-0.5	+0.1
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.2	-3.5	+0.0	+0.8	+0.0
mouse coculture	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.2	-3.2	+0.1	+0.5	+0.1
mouse	mouse 15; day 1; diet=HighFatHighSugar; sample=FecalPellet	+0.0	-3.0	+0.4	-0.1	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; mouse2; day4	-0.1	-3.1	-0.1	+0.5	+0.2
mouse	mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet	-0.1	-1.7	-1.0	+0.7	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day2	+0.2	-3.0	+0.9	-0.2	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	+0.1	-2.2	-0.3	+0.7	+0.2