Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS17810 and BBR_RS17815 are separated by 123 nucleotidesBBR_RS17815 and BBR_RS17820 are separated by 55 nucleotidesBBR_RS17820 and BBR_RS17825 overlap by 8 nucleotidesBBR_RS17825 and BBR_RS17830 overlap by 8 nucleotides BBR_RS17810: BBR_RS17810 - HAD family hydrolase, at 1,776,276 to 1,776,962 _RS17810 BBR_RS17815: BBR_RS17815 - nucleoside hydrolase, at 1,777,086 to 1,778,069 _RS17815 BBR_RS17820: BBR_RS17820 - carbohydrate kinase family protein, at 1,778,125 to 1,779,081 _RS17820 BBR_RS17825: BBR_RS17825 - phosphoribosylanthranilate isomerase, at 1,779,074 to 1,779,775 _RS17825 BBR_RS17830: BBR_RS17830 - hypothetical protein, at 1,779,768 to 1,780,583 _RS17830
Group Condition BBR_RS17810 BBR_RS17815 BBR_RS17820 BBR_RS17825 BBR_RS17830
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -1.5 +0.4 -0.0 -0.7 -0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4 -1.3 -0.4 +0.1 -0.3 -0.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -0.7 -0.5 +0.3 -0.3 -0.4
nutrient dropout CDM1 without Phenylalanine -0.5 -0.3 -0.3 -0.1 -0.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 -1.1 -0.5 -0.2 +0.1 +0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 +0.1 -1.0 +0.3 -0.7 -0.1
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -0.6 +0.2 -0.2 -0.5 -0.2
mouse preculture cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.8 +0.3 -0.1 -0.3 -0.2
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.5 -0.3 -0.4 -0.3 -0.4
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -1.1 +0.3 -0.1 +0.1 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 -0.7 -0.1 +0.2 +0.3 -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -0.7 -0.0 +0.2 +0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -0.6 -0.4 +0.6 +0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.3 -0.3 +0.8 -0.4 -0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -0.5 -0.4 +0.4 +0.2 -0.3
mouse mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet -0.7 +0.2 +0.0 +0.1 +0.5
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.9 +0.1 -0.1 -0.2 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 +0.3 -0.3 +0.6 +0.3 +0.2
stress Recovery broth with Benzethonium chloride 0.1 mM +0.7 +0.4 +0.3 +0.1 -0.1
stress timecourse MRS + kanamycin Time8hr +0.7 +0.2 +0.3 +0.1 +0.2
stress timecourse MRS + kanamycin Time5hr +0.6 +0.1 +0.5 +0.3 +0.0
stress timecourse MRS + kanamycin Time24hr +0.6 +0.2 +0.3 +0.3 +0.2
stress timecourse MRS + kanamycin Time48hr +0.8 -0.0 +0.3 +0.2 +0.3
stress timecourse MRS + carbenicillin Time9hr +0.6 +0.1 +0.4 +0.2 +0.3
stress timecourse MRS + carbenicillin Time9hr +0.6 +0.1 +0.3 +0.3 +0.2
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 +0.1 +0.4 +0.3 +0.4 +0.5
stress timecourse MRS + carbenicillin Time8hr +0.6 +0.1 +0.4 +0.2 +0.3
mrs timecourse MRS Time8hr +0.5 +0.2 +0.5 +0.4 +0.2
stress timecourse MRS + kanamycin Time9hr +0.7 +0.2 +0.6 +0.2 +0.2
stress Recovery broth with Ciprofloxacin 0.1 mM +0.5 +0.5 +0.3 +0.7 +0.1
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