Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS17625 and BBR_RS17630 are separated by 139 nucleotidesBBR_RS17630 and BBR_RS17635 are separated by 295 nucleotidesBBR_RS17635 and BBR_RS17640 are separated by 166 nucleotidesBBR_RS17640 and BBR_RS17645 are separated by 285 nucleotides BBR_RS17625: BBR_RS17625 - HAD family phosphatase, at 1,732,043 to 1,732,747 _RS17625 BBR_RS17630: BBR_RS17630 - methionyl-tRNA formyltransferase, at 1,732,887 to 1,733,900 _RS17630 BBR_RS17635: BBR_RS17635 - dihydroxy-acid dehydratase, at 1,734,196 to 1,736,058 _RS17635 BBR_RS17640: BBR_RS17640 - DNA-directed RNA polymerase subunit omega, at 1,736,225 to 1,736,509 _RS17640 BBR_RS17645: BBR_RS17645 - methionine adenosyltransferase, at 1,736,795 to 1,738,015 _RS17645
Group Condition BBR_RS17625 BBR_RS17630 BBR_RS17635 BBR_RS17640 BBR_RS17645
nutrient dropout CDM1 without Valine +0.2 N.D. -5.9 -5.2 N.D.
nutrient dropout CDM1 without Valine +0.4 N.D. -6.0 -5.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -4.2 N.D. -0.2 -4.4 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos +0.2 N.D. -5.5 -3.1 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos +0.2 N.D. -4.1 -4.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -4.1 N.D. -0.1 -4.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -2.7 N.D. -0.3 -4.3 N.D.
nutrient dropout CDM1 without Leucine +0.4 N.D. -2.3 -5.2 N.D.
nutrient dropout CDM1 without Leucine +0.2 N.D. -1.7 -5.3 N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.4 N.D. -2.1 -2.3 N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.6 N.D. -2.1 -3.9 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -2.2 N.D. -0.1 -4.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -2.6 N.D. -0.2 -3.8 N.D.
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -2.7 N.D. -0.1 -3.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -2.1 N.D. -0.1 -4.3 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -1.7 N.D. +0.0 -4.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 -1.5 N.D. -0.1 -4.7 N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.8 N.D. -0.5 -3.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -1.7 N.D. -0.3 -4.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 -2.2 N.D. -0.0 -4.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -1.4 N.D. -0.1 -4.6 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 -1.5 N.D. +0.2 -4.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day1 -1.3 N.D. -0.2 -4.6 N.D.
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.8 N.D. -1.4 -3.9 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -1.7 N.D. -0.2 -4.1 N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.9 N.D. -1.9 -3.2 N.D.
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.6 N.D. -1.5 -3.9 N.D.
stress Recovery broth with Nitrofurantoin 0.05 mM +0.2 N.D. +0.2 +6.0 N.D.
stress Recovery broth with Bicyclomycin 0.07 mM +0.5 N.D. -0.1 +6.7 N.D.
stress Recovery broth with Bicyclomycin 0.1 mM -0.2 N.D. +0.1 +7.6 N.D.
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