Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS17415 and BBR_RS17420 overlap by 27 nucleotidesBBR_RS17420 and BBR_RS17425 are separated by 142 nucleotidesBBR_RS17425 and BBR_RS17430 are separated by 156 nucleotidesBBR_RS17430 and BBR_RS17435 are separated by 152 nucleotides BBR_RS17415: BBR_RS17415 - hypothetical protein, at 1,686,686 to 1,686,898 _RS17415 BBR_RS17420: BBR_RS17420 - PucR family transcriptional regulator, at 1,686,872 to 1,688,374 _RS17420 BBR_RS17425: BBR_RS17425 - cytosine deaminase, at 1,688,517 to 1,689,839 _RS17425 BBR_RS17430: BBR_RS17430 - ATP-dependent Clp protease ATP-binding subunit, at 1,689,996 to 1,692,605 _RS17430 BBR_RS17435: BBR_RS17435 - universal stress protein, at 1,692,758 to 1,693,723 _RS17435
Group Condition BBR_RS17415 BBR_RS17420 BBR_RS17425 BBR_RS17430 BBR_RS17435
nutrient dropout CDM1 without Phenylalanine -3.7 -0.3 -0.2 N.D. -0.3
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.2 -0.0 -2.1 N.D. +0.1
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -1.7 -0.6 -1.9 N.D. +0.4
mouse mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet -2.4 +0.2 +0.2 N.D. -1.8
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.6 +0.1 -0.9 N.D. -0.2
mouse mouse 1; day 1; diet=StandardDiet; sample=FecalPellet +0.5 -0.0 +0.2 N.D. -4.4
mouse mouse 1; day 2; diet=StandardDiet; sample=FecalPellet +0.3 +0.0 +0.1 N.D. -3.9
stress Recovery broth with Bicyclomycin 0.07 mM -2.5 +0.1 -0.3 N.D. -0.8
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 -3.2 +0.0 +0.1 N.D. -0.0
mouse mouse 4; day 1; diet=StandardDiet; sample=FecalPellet -1.5 +0.1 +0.1 N.D. -1.8
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.2 -0.8 -2.2 N.D. +0.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3 -2.9 +0.2 +0.6 N.D. -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +1.7 -0.1 -0.2 N.D. -3.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +1.1 +0.3 +0.1 N.D. -2.6
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +2.1 -0.2 +0.1 N.D. -3.0
carbon source reconstituted MRS with Difucosyllactose 7.9 mM -2.1 +0.3 +0.2 N.D. +0.8
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +1.5 -0.0 -2.2 N.D. +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +1.9 +0.2 -0.2 N.D. -1.5
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +1.9 -0.1 -0.4 N.D. -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 +2.2 -0.3 -0.2 N.D. -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +2.4 +0.1 -0.2 N.D. -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 +2.6 -0.2 -0.4 N.D. -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +2.6 -0.4 -0.2 N.D. +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +2.4 -0.4 -0.4 N.D. +0.6
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +2.3 -0.2 -0.3 N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +2.0 +0.0 -0.9 N.D. +1.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +2.2 -0.2 -0.3 N.D. +0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +2.5 -0.2 -0.1 N.D. +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 +2.3 -0.2 -0.6 N.D. +1.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 +2.8 -0.5 -0.5 N.D. +1.2
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