Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS17260 and BBR_RS17265 are separated by 11 nucleotidesBBR_RS17265 and BBR_RS17270 are separated by 143 nucleotidesBBR_RS17270 and BBR_RS17275 are separated by 228 nucleotidesBBR_RS17275 and BBR_RS17280 are separated by 138 nucleotides BBR_RS17260: BBR_RS17260 - Sucrose permease, at 1,650,572 to 1,651,042 _RS17260 BBR_RS17265: BBR_RS17265 - beta-fructofuranosidase, at 1,651,054 to 1,652,610 _RS17265 BBR_RS17270: BBR_RS17270 - ROK family protein, at 1,652,754 to 1,653,521 _RS17270 BBR_RS17275: BBR_RS17275 - nitroreductase, at 1,653,750 to 1,654,532 _RS17275 BBR_RS17280: BBR_RS17280 - glycosyl transferase, at 1,654,671 to 1,655,693 _RS17280
Group Condition BBR_RS17260 BBR_RS17265 BBR_RS17270 BBR_RS17275 BBR_RS17280
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -1.2 -0.1 -0.4 -0.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -1.2 +0.1 -0.4 -0.4 N.D.
nutrient dropout CDM1 without Riboflavin -0.5 -0.1 -0.2 -0.7 N.D.
mouse mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet -0.9 +0.0 -0.6 +0.1 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 -0.0 -0.2 -0.1 -1.1 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 -0.4 +0.1 -1.2 +0.1 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 -0.3 -0.4 -0.5 -0.1 N.D.
nutrient dropout control CDM1 -0.4 +0.0 -0.5 -0.6 N.D.
nutrient dropout CDM1 without Lysine -0.1 +0.0 -0.5 -0.8 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 +0.3 -0.4 -1.1 +0.1 N.D.
nutrient dropout CDM1 without Uracil -0.2 +0.2 -0.8 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -0.9 -0.0 -0.5 +0.3 N.D.
nutrient dropout CDM1 without Uracil -0.4 +0.3 -0.2 -0.6 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 -0.4 +0.1 -0.9 +0.2 N.D.
carbon source reconstituted MRS with Difucosyllactose 7.9 mM +0.4 -0.6 -0.1 -0.7 N.D.
nutrient dropout control CDM1 -0.3 +0.3 +0.0 -0.8 N.D.
nutrient dropout CDM1 without Adenine -0.0 +0.2 +0.1 -1.1 N.D.
nutrient dropout CDM1 without Asparagine +0.2 +0.3 -0.7 -0.6 N.D.
nutrient dropout control CDM1 -0.2 +0.4 -0.5 -0.4 N.D.
nutrient dropout CDM1 without Phenylalanine -0.1 +0.5 -1.2 +0.3 N.D.
nutrient dropout CDM1 without Isoleucine -0.3 +0.2 +0.3 -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 -0.7 -0.3 -0.0 +0.7 N.D.
nutrient dropout CDM1 without Phenylalanine +0.5 +0.3 -0.7 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.5 +0.3 -0.2 -0.5 N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.1 -0.0 -0.7 +0.7 N.D.
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.0 +0.5 -0.8 +0.6 N.D.
carbon source reconstituted MRS with Inulin 0.8 mM +0.3 -0.6 +0.5 +0.1 N.D.
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet +0.6 +0.1 -0.7 +0.4 N.D.
stress Recovery broth with Thioridazine 0.1 mM +0.6 +0.2 +0.1 +0.6 N.D.
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.3 +0.1 +0.4 +0.7 N.D.
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