Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS16900 and BBR_RS16905 are separated by 589 nucleotidesBBR_RS16905 and BBR_RS16910 overlap by 1 nucleotidesBBR_RS16910 and BBR_RS16915 are separated by 102 nucleotidesBBR_RS16915 and BBR_RS16920 are separated by 16 nucleotides BBR_RS16900: BBR_RS16900 - D-tyrosyl-tRNA(Tyr) deacylase, at 1,562,878 to 1,563,366 _RS16900 BBR_RS16905: BBR_RS16905 - hypothetical protein, at 1,563,956 to 1,564,990 _RS16905 BBR_RS16910: BBR_RS16910 - UDP-N-acetylmuramate--L-alanine ligase, at 1,564,990 to 1,566,528 _RS16910 BBR_RS16915: BBR_RS16915 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 1,566,631 to 1,567,803 _RS16915 BBR_RS16920: BBR_RS16920 - putative lipid II flippase FtsW, at 1,567,820 to 1,569,037 _RS16920
Group Condition BBR_RS16900 BBR_RS16905 BBR_RS16910 BBR_RS16915 BBR_RS16920
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet +0.4 -8.2 N.D. N.D. N.D.
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet +0.2 -7.8 N.D. N.D. N.D.
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -0.0 -7.4 N.D. N.D. N.D.
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet +0.3 -7.5 N.D. N.D. N.D.
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -0.2 -6.6 N.D. N.D. N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.1 -6.9 N.D. N.D. N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.3 -7.0 N.D. N.D. N.D.
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet +0.2 -6.8 N.D. N.D. N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.1 -5.3 N.D. N.D. N.D.
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +0.4 -6.7 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 +0.0 -6.3 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.0 -6.2 N.D. N.D. N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +0.4 -6.5 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day2 -1.1 -4.9 N.D. N.D. N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.4 -6.2 N.D. N.D. N.D.
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.2 -5.9 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 +0.7 -6.1 N.D. N.D. N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +0.6 -5.9 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 +0.6 -5.7 N.D. N.D. N.D.
mouse preculture cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.4 -5.4 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +0.6 -5.6 N.D. N.D. N.D.
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.4 -5.4 N.D. N.D. N.D.
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.8 -5.7 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 +1.1 -6.0 N.D. N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.9 -5.6 N.D. N.D. N.D.
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +0.7 -5.4 N.D. N.D. N.D.
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +1.1 -5.7 N.D. N.D. N.D.
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 +1.1 -5.6 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.7 -5.1 N.D. N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.9 -5.2 N.D. N.D. N.D.
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